Director
Publications
Molecular Biology Lab
Proteomics
Infractructure
Phd
funding
Collaborators
visitors gallery
Trainees
 
 
T. S. Keshava Prasad, Ph.D.
Faculty Scientist
 
Institute of Bioinformatics
Discoverer Building, International Tech Park, Whitefield
Bangalore - 560 066
E-mail: keshav at ibioinformatics dot org
Phone: +91-80-28416140 Fax: +91-80-28416132
 
Education
Ph.D. in Mycology, Goa University, 2004
M.Sc. in Biosciences, Mangalore University, 1998
 

Positions Held

Faculty Scientist, Institute of Bioinformatics, Bangalore, March 8, 2004 - present
Professor and Deputy Director, YU-IOB Center for Systems Biology and Molecular Medicine, Yenepoya University, Mangalore, June 1, 2015 - present
Officer-Incharge at Proteomics and Bioinformatics Laboratory, Neurobiology Research Centre, The National Institute of Mental Health and Neuroscience (NIMHANS), Bangalore, July 05, 2012 – present
Visiting Scientist at SDS Tuberculosis Research Centre and Rajiv Gandhi Institute of Chest Diseases, Bangalore, July 10, 2014 – present
Lecturer, St. Xaviers College, Mapusa, Goa, June 1, 2003 - December 30, 2003
 

Honors and Awards

Visiting Scientist at Boone Laboratory, Centre for Cellular and Biomolecular Research in University of Toronto, Canada
Young Investigator, Department of Biotechnology, Government of India
Member, Board of Studies, Biotechnology Finishing School, Siddaganga Institute of Technology, Tumkur
Member, Institutional Committee for Stem Cell Research and Therapy (IC-SCRT), Stempeutics Research Pvt. Ltd., Manipal
Travel award from 'National Institute of Genetics, Japan' to speak on 'Curation for Systems Biology Resources in an Academic Model' in the 4th International Biocuration Conference held at Tokyo, Japan - October 11-14, 2010
F1000 Travel Award from the Wellcome Trust to participate “EMBO international conference of Molecular and Population Biology of Mosquitoes”held at Kolymbari in Greece on July 15-19, 2013
HUPO Young Investigator, Paper selected for oral presentation at 13th Human Proteome Organization World Congress to be held from October 5-8, 2014 in Madrid, Spain
 

Area of Specialization

Proteomics
Proteogenomics and Genome Annotation
Biocuration and Databases
 

Biography

Dr. T. S. Keshava Prasad is a recipient of Young Investigator Award from the Department of Biotechnology, Government of India.  He is leading IOB's efforts on the development of the Human Protein Reference Database, which is cited over 2000 times.  In addition, he has successfully completed a DBT funded research project on proteomic profiling of esophageal squamous cell carcinoma in collaboration with Kidwai Memorial Institute of Oncology, Bangalore. His research group is now increasingly focusing on infectious diseases, human pathogens and vectors of human diseases. He is funded by DST, Government of India to develop an epitope based diagnostic gadget for the detection of tuberculosis in Indian population. He is using genomic and proteomic strategies to investigate biomarkers for infectious diseases including tuberculosis and malaria; and to identify molecules associated with host responses to infections in different chronic meningitis cases. Using proteogenomic principles, he is carrying out genome annotation of infectious fungi including species of Candida and Cryptococcus; and vector mosquitoes such as Anopheles stephensi and Aedes aegypti. Recently, he has received the F1000 travel award from the Wellcome Trust to present the proteogenomic data of An. stephensi in the “EMBO international conference of Molecular and Population Biology of Mosquitoes” held at Kolymbari in Greece. He is an editorial board member for the Journal of Proteomics and Bioinformatics and also for the Journal of Proteins and Proteomics and a reviewer for the journals Molecular and Cellular ProteomicsPLOS OneJournal of ProteomicsProteomicsTrends in Molecular MedicineGenomicsBMC BioinformaticsBioinformaticsBBA - Proteins and ProteomicsDatabase (Oxford Journal)DNA ResearchBioinformatics and Biology InsightsIndian Journal of Medical ResearchJournal of EthnopharmacologyJournal of Neurosciences in Rural PracticeInternational Journal of Rheumatic Diseases and International Journal of Molecular Sciences.
 

Publications

Research papers: 114; Review articles: 5; Book chapters: 6

 201720162015201420132012201120102009 | 2008 | 2007 | 2006 | 2005 | 2004 | 2003 | 2002
 

2017 (Number of publications - 5)

Verma, R., Pinto, S., Patil, A. H., Advani, J., Subba, P., Kumar, M., Sharma, J., Dey, G., Ravikumar, R., Buggi, S., Satishchandra, P., Sharma, K., Suar, M. T., Srikanth, C., Singh, D., Gowda, H., Pandey, A., Gandotra, S. and Prasad, T. S. K.* (2017). Quantitative proteomic and phosphoproteomic analysis of H37Ra and H37Rv strains of Mycobacterium tuberculosis. Journal of Proteome Research. [PubMed] (*Corresponding author)

Prasad, T. S. K*., Mohanty, A. K., Kumar, M., Sreenivasamurthy, S. K., Dey, G., Nirujogi, R. S., Pinto, S. M., Madugundu, A. K., Patil, A. H., Advani, J., Manda, S. S., Gupta, M. K., Dwivedi, S. B., Kelkar, D. S., Hall, B., Jiang, X., Peery, A., Rajagopalan, P., Yelamanchi, S. D., Solanki, H. S., Raja, R., Sathe, G. J., Chavan, S. N., Verma, R., Patel, K. M., Jain, A. P., Syed, N., Datta, K. K., Khan, A. A., Dammalli, M., Jayaram, S., Radhakrishnan, A., Mitchell, C. J., Na, C. H., Kumar, N., Sinnis, P., Sharakhov, I. V., Wang, C., Gowda, H., Tu, Z., Kumar, A., and Pandey, A. (2017). Integrating transcriptomic and proteomic data for accurate assembly and annotation of genomes. Genome Research. 27, 133-144. [PubMed] (*Corresponding author)

Dhawan, R., Kumar, M., Mohanty, A. K., Dey, G., Advani, J., Prasad, T. S. K.* and Kumar, A. (2017). Mosquito-borne diseases and Omics: salivary gland proteome of the female Aedes aegypti mosquito. OMICS: A Journal of Integrative Biology. 21, 45-54. [PubMed] (*Corresponding author)

Dammalli, M., Murthy, K. R., Pinto, S. M., Murthy, K. B., Nirujogi, R. S., Madugundu, A. K., Dey, G., Nair, B., Gowda, H. and Prasad, T. S. K.* (2017). Towards post-genomics ophthalmology: A proteomic map of the human choroid-retinal pigment epithelium tissue. OMICS: A Journal of Integrative Biology. [PubMed] (*Corresponding author)

Nirujogi, R. S., Muthusamy, B., Kim, M. S., Sathe, G. J., Lakshmi, P. T. V., Kovbasnjuk, O. N., Prasad, T. S. K., Wade, M and Jabbour, R. E. (2017). Secretome analysis of diarrhea-inducing strains of Eschreichia coli. Proteomics. In press

2016 (Number of publications - 20)

Mir, S.A., Pinto, S.M., Paul, S., Raja, R., Nanjappa, V., Syed, N., Advani, J., Renuse, S., Sahasrabuddhe, N.A., Prasad, T.S.K., Giri, A.K., Gowda, H. and Chatterjee, A. (2016). SILAC-based quantitative proteomic analysis reveals widespread molecular alterations in human skin keratinocytes upon chronic arsenic exposure. Proteomics. [PubMed]

Chatterjee, O., Patil, K., Sahu, A., Gopalakrishnan, L., Mol, P., Advani, J., Mukherjee, S., Christopher, R., and Prasad, T. S. K.* (2016). An overview of the Oxytocin-Oxytocin receptor signaling network. Journal of Cell Communication and Signalling. [PubMed] (*Corresponding author)

Radhakrishnan, A., Nanjappa, V., Raja, R., Sathe, G., Puttamallesh, V. N., Jain, A. P., Pinto, S. M., Balaji, S. A., Chavan, S., Sahasrabuddhe, N. A., Mathur, P. P., Kumar, M. M., Prasad, T. S. K., Santosh, V., Sukumar, G., Califano, J. A., Rangarajan, A., Sidransky, D., Pandey, A., Gowda, H. and Chatterjee, A. (2016). A dual specificity kinase, DYRK1A, as a potential therapeutic target for head and neck squamous cell carcinoma. Scientific Reports. 6, 36132. [PubMed]

Danda, R., Ganapathy, K., Sathe, G., Madugundu, A. K., Ramachandran, S., Krishnan, U. M., Khetan, V., Rishi, P., Prasad, T. S. K., Pandey, A., Krishnakumar, S., Gowda, H. and Elchuri, S. V. (2016). Proteomic profiling of retinoblastoma by high resolution mass spectrometry. Clinical Proteomics. [PubMed]

Yelamanchi, S. D., Kumar, M., Madugundu, A., Gopalakrishnan, L., Dey, G., Chavan, S., Sathe, G., Mathur, P. P., Gowda, H., Mahadevan, A., Shankar, S. K., Prasad, T. S. K*. (2016). Characterization of human pineal gland proteome. Molecular Biosystems. [PubMed] (*Corresponding author)

Raja, R., Sahasrabuddhe, N. A., Radhakrishnan, A., Syed, N., Solanki, H., Puttamallesh, V. N., Balaji, S. A., Nanjappa, V., Datta, K. K., Babu, N., Renuse, S. Patil, A. H, Izumchenko, E., Prasad, T. S. K., Chang, X., Rangarajan, A., Sidransky, D., Pandey, A., Gowda, H. and Chatterjee, A. (2016). Chronic exposure to cigarette smoke leads to activation of p21 (RAC1) - activated kinase 6 (PAK6) in non-small cell lung cancer cells. Oncotarget. [PubMed]

Bhattacharjee, M., Balakrishnan, L., Renuse, S., Advani, J., Goel, R., Sathe, G., Prasad, T. S. K., Nair, B., Jois, R., Shankar, S., Pandey, A. (2016). Synovial fluid proteome in rheumatoid arthritis Clinical Proteomics. 13, 12. [PubMed]

Mehta, S., Sreenivasamurthy, S., Banerjee, S., Mukherjee, S., Prasad, T. S. K., and Chowdhary, A. (2016). Pathway Analysis of Proteomics Profiles in Rabies Infection: Towards Future Biomarkers? OMICS: A Journal of Integrative Biology. 20, 97-109. [PubMed]

Yelamanchi S. D., Solanki, H. S., Radhakrishnan, A., Balakrishnan, L., Advani, J., Raja, R., Sahasrabuddhe, N. A., Mathur, P. P., Dutta, P., Prasad, T. S. K., Korbonits, M., Chatterjee, A., Gowda, H., Mukherjee, K. K. (2016). Signaling network map of aryl hydrocarbon receptor Journal of Cell Communication and Signaling. [PubMed]

Murthy, K. R., Dammali, M., Pinto, S. M., Murthy, K. B., Nirujogi, R. S., Madugundu, A. K., Dey, G., Subbannayya, Y., Mishra, U. K., Nair, B., Gowda, H. and Prasad, T. S. K.* (2016). A comprehensive proteomics analysis of the human iris tissue: Ready to embrace postgenomics precision medicine in ophthalmology? OMICS: A Journal of Integrative Biology. In press (*Corresponding author)

Sathe, G. J., Pinto, S. M., Syed, N., Nanjappa, V., Solanki, H. S., Renuse, S., Chavan, S., Khan, A. A., Patil, A. H., Nirujogi, R. S., Nair, B., Mathur, P. P., Prasad, T. S. K., Gowda, H. and Chatterjee, A. (2016). Phosphotyrosine profiling of curcumin-induced signaling. Clinical Proteomics. . 13:13. [PubMed]

Anand, A., Sharma, K., Sharma, S. K., Singh, R., Sharma, N. K. and Prasad T. S. K. (2016). AMD genetics in India: The missing links. Frontiers in Aging Neuroscience. 8, 115 [PubMed]

Subbannayya, T., Variar, P., Advani, J., Nair, B., Shankar, S., Gowda, H., Saussez, S., Chatterjee, A. and Prasad, T. S. K.* (2016). An integrated signal transduction network of macrophage migration inhibitory factor. Journal of Cell Communication and Signaling. 10, 165-170. [PubMed] (*Corresponding author)

Barua, P., Subba, P., Lande, N. V., Mangalaparthi, K. K., Prasad, T. S. K., Chakraborty, S., Chakraborty, N. (2016). Gel based and gel-free search for plasma membrane proteins in chickpea (Cicer arietinum L.) augments the comprehensive data sets of membrane protein repertoire. Journal of Proteomics. [PubMed]

Sunitha, B., Gayathri, N., Kumar, M., Prasad, T. S. K., Nalini, A., Padmanabhan, B., and Bharath, M. M. S. (2016). Muscle biopsies from human neuromuscular diseases with myopathic pathology reveal common alterations in mitochondrial function. Journal of Neurochemistry. [PubMed]

Datta, K. K., Patil, A. H., Patel, K., Dey, G., Madugundu, A. K., Renuse, S., Kaviyil, J. E., Nirujogi, R. S., Arunima, A., Daswani, B., Kaur, I., Mohanty, J., Sinha, R., Jaiswal, S., Sivapriya, S., Sonnathi, Y., Chattoo, B. B., Gowda, H., Ravikumar, R. and Prasad, T. S. K.* (2016). Proteogenomics of Candida tropicalis - an opportunistic pathogen with importance for global health. OMICS: A Journal of Integrative Biology. 20, 239-247. [PubMed] (*Corresponding author)

Radhakrishnan, A., Nanjappa, V., Raja, R., Sathe, G. J., Chavan, S., Nirujogi, R. S., Patil, A., Solanki, H., Renuse, S., Sahasrabuddhe, N. A., Mathur, P. P., Prasad, T. S. K., Kumar, P., Califano, J. A., Sidransky, D., Pandey, A., Gowda, H. and Chatterjee, A. (2016). Dysregulation of splicing proteins in head and neck squamous cell carcinoma. Cancer Biology and Therapy. 17, 219-29. [PubMed]

Subbannayya, Y., Pinto, S. M., Gowda, H. and Prasad, T. S. K.* (2016). Proteogenomics for understanding oncology: recent advances and future prospects. Expert Review of Proteomics. 13, 297-308. [PubMed] (*Corresponding author)

Yelamanchi, S. D., Jayaram, S., Thomas, J. K., Gundimeda, S., Khan, A. A., Singhal, A., Prasad, T. S. K., Pandey, A., Somani, B. L. and Gowda, H. (2016). A pathway map of glutamate metabolism. Journal of Cell Communication and Signaling. 10, 69-75. [PubMed]

Verma, R., Balakrishnan, L., Sharma. K., Khan A. A., Advani, J., Gowda, H., Tripathy, S.P., Suar, M., Pandey, A., Gandotra, S., Prasad, T. S. K*. and Subramanian, S. (2016). A network map of Interleukin-10 signaling pathway. Journal of Cell Communication and Signaling. 10, 61-67. [PubMed] (*Corresponding author) 

2015 (Number of publications - 23)

Pawar, H., Manda, S. S., Kashyap, M. K., Sathe, G. J., Chavan, S., Singal, M., Manju, H. C., Kumar, K. V. V., Vijayakumar, M., Sirdeshmukh, R., Pandey, A., Prasad, T. S. K., Gowda, H. and Kumar R. V. (2015). Downregulation of S100 Calcium Binding Protein A9 in Esophageal Squamous Cell Carcinoma. The Scientific World Journal. [PubMed]

Subbannayya, T., Leal-Rojas, P., Barbhuiya, M., Raja, R., Renuse, S., Sathe, G., Pinto, S. M., Syed, N., Nanjappa, V., Patil, A. H., Garcia, P., Sahasrabuddhe, N. A., Nair, B., Guerrero-Preston, R., Navani, S., Tiwari, P. K., Santosh, V., Sidransky, D., Prasad, T. S. K., Gowda, H., Roa, J. C., Pandey, A. and Chatterjee, A. (2015). Macrophage migration inhibitory factor - a therapeutic target in gallbladder cancer. BMC Cancer. 15, 843.  [PubMed]

Mitchell, C. J., Getnet, D., Kim, M. S., Manda, S. S., Kumar, P., Huang, T. C., Pinto, S., Nirujogi, R. S., Iwasaki, M., Shaw, P., Wu, X., Zhong, J., Chaerkady, R., Marimuthu, A., Muthusamy, B., Sahasrabuddhe, N. A., Raju, R., Bowman, C., Danilova, L., Cutler, J., Kelkar, D. S., Drake, C. G., Prasad, T. S. K., Marchionni, L., Marukami, P. N., Scott, A. F., Shi, L., Thierry-Mieg, J., Thierry-Mieg, T., Irizarry, R., Cope, L., Ishihama, Y., Wang, C., Gowda, H. and Pandey, A. (2015). A multi-Omic analysis of human naive CD4+ T cells. BMC Systems Biology. 9, 75. [PubMed]

Raju, R., Gadakh, S., Gopal, P., George, B., Advani, J., Soman, S., Prasad, T. S. K., Reshmi, G. (2015). Differential ligand-signaling network of CCL19/CCL21-CCR7 system. Database. [PubMed] 

Nanjappa, V., Renuse, S., Sathe, G. J., Raja, R., Syed, N., Radhakrishnan, A., Subbannayya, T., Patil, A., Marimuthu, A., Sahasrabuddhe, N. A., Guerrero-Preston, R., Somani, B. L., Nair, B., Kundu, G. C., Prasad, T. S. K., Califano, J. A., Gowda, H., Sidransky, D., Pandey, A. and Chatterjee, A. (2015). Chronic exposure to chewing tobacco selects for overexpression of stearoyl-CoA desaturase in normal oral keratinocytes. Cancer Biology and Therapy. [PubMed] 

Pawar, H., Chavan, S., Mahale, K., Khobragade, S., Kulkarni, A., Patil, A., Chaphekar, D., Varriar, P., Sudeep, A., Pai, K., Prasad, T. S. K., Gowda, H. and Patole, M. S. (2015). A Proteomic map of the unsequenced kala-azar vector Phlebotomus papatasi using cell line. Acta Tropica. 152, 80-89.[PubMed] 

Selvan, L. D. N., Sreenivasamurthy, S. K., Kumar, S., Yelamanchi, S. D., Madugundu, A. K., Anil, A. K., Renuse, S., Nair, B. G., Gowda, H., Mathur, P. P, Satishchandra, P., Shankar S. K., Mahadevan, A., Prasad, T. S. K*. (2015). Characterization of host response to Cryptococcus neoformans through quantitative proteomic analysis of cryptococcal meningitis co-infected with HIV. Molecular BioSystems. 11, 2529-2540.[PubMed](*Corresponding author) 

Sharma, J., Balakrishnan, L., Datta, K. K., Sahasrabuddhe, N. A., Khan A. A., Sahu, A., Singhal, A., Derese, G., Raju, R., Chatterjee, A., Gowda, H., Prasad, T. S. K., Shankar, S. and Pandey, A. (2015). A knowledgebase resource for Interleukin-17 family mediated signaling. Journal of Cell Communication and Signaling. 9, 291-296. [PubMed] 

Mir, S. A., Rajagopalan, P., Jain, A. P., Khan, A. A., Datta, K. K., Mohan, S. V., Lateef, S. S., Sahasrabuddhe, N., Somani, B. L., Prasad, T. S. K., Chatterjee, A., Kumar, K. V. V., Kumar, M. V., Kumar, R. V., Gundimeda, S., Pandey, A. and Gowda H. (2015). LC-MS-based serum metabolomic analysis reveals dysregulation of phosphatidylcholines in esophageal squamous cell carcinoma. Journal of Proteomics. 127, 96-102. [PubMed] 

Subbannayya, Y., Mir, S. A., Renuse, S., Manda, S. S., Pinto, S. M., Puttamallesh, V. N., Solanki, H. S., Manju, H .C., Syed, N., Sharma, R., Christopher, R., Vijayakumar, M., Veerendra Kumar, K. V., Prasad, T. S. K., Ramaswamy, G., Kumar, R. V., Chatterjee, A., Pandey, A. and Gowda, H. (2015). Identification of differentially expressed serum proteins in gastric adenocarcinoma. Journal of Proteomics. 127, 80-88. [PubMed]  

Reddy, P. J., Sinha, S., Ray, S., Sathe, G. J., Chatterjee, A., Prasad, T. S. K., Dhali, S., Rapole, S., Panda, D. and Srivastava, S. (2015). Comprehensive analysis of temporal alterations in cellular proteome of Bacillus subtilis under curcumin treatment. PLOS ONE. 10, e0120620. [PubMed]  

Murthy, K. R., Rajagopalan, P., Pinto, S. M., Advani, J., Murthy, P. R., Goel, R., Subbannayya, Y., Balakrishnan, L., Dash, M., Anil, A. K., Manda, S. M., Nirujogi, R. S., Kelkar, D. S., Sathe, G. J., Dey, G., Chatterjee, A., Gowda, H., Chakravarti, S., Shankar, S., Sahasrabuddhe, N. A., Nair, B., Somani, B. L., Prasad, T. S. K. and Pandey, A. (2015). Proteomics of human aqueous humor. OMICS: A Journal of Integrative Biology. 19, 283-293. [PubMed]  

Reddy, P. J., Atak, A., Ghantasala, S., Kumar, S., Gupta, S., Prasad, T. S. K., Zingde, S. M. and Srivastava, S. (2015). An Update on Proteomic Research in India. Journal of Proteomics. 127, 7-17. [PubMed] 

Reddy, P. J., Ray, S., Sathe, G. J., Gajbhiye, A., Prasad, T. S. K., Rapole, S., Panda, D. and Srivastava, S. (2015). A comprehensive proteomic analysis of totarol induced alterations in Bacillus subtilis by multipronged quantitative proteomics. Journal of Proteomics. 114, 247-262. [PubMed] 

Sharma, R., Gowda, H., Chavan, S., Advani, J., Kelkar, D., Kumar, S.S., Bhattacharjee, M., Chaerkady, R., Prasad, T. S. K., Pandey, A., Dindagur, N., and Christopher, R. (2015). Proteomic signature of endothelial dysfunction identified in serum of acute ischemic stroke patients by iTRAQ-based LC-MS approach. Journal of Proteome Research. 14, 2466-2479.[PubMed] 

Pinto, S. M., Nirujogi, R. S., Leal-Rojas, P., Patil, A. H., Manda, S. S., Subbannayya, Y., Roa, J. C., Chatterjee, A., Prasad, T. S. K. and Pandey, A. (2015). Quantitative phosphoproteomic analysis of IL-33 mediated signaling. Proteomics. 15, 532-544. [PubMed]

Subbannayya, Y., Syed, N., Barbhuiya, M. A., Raja, R., Marimuthu, A., Sahasrabuddhe, N. A., Pinto, S. M., Manda, S. S., Renuse, S., Manju, H. C., Zameer, M. A. L., Sharma, J., Brait, M., Srikumar, K., Roa, J. C., Vijaya Kumar, M., Veerendra Kumar, K. V., Prasad, T. S. K., Ramaswamy, G., Kumar, R. V., Pandey, A., Gowda, H. and Chatterjee, A. (2015). Calcium calmodulin dependent kinase kinase 2 - a novel therapeutic target for gastric adenocarcinoma. Cancer Biology and Therapy. 16, 336-345. [PubMed] 

Syed, N., Chavan, S., Sahasrabuddhe, N. A., Renuse, S., Sathe, G., Nanjappa, V., Radhakrishnan, A., Raja, R., Pinto, S. M., Srinivasan, A., Prasad, T. S. K., Srikumar, K., Gowda, H., Santosh, V., Sidransky, D., Califano, J. A., Pandey, A. and Chatterjee, A. (2015). Silencing of high-mobility group box 2 (HMGB2) modulates cisplatin and 5-fluorouracil sensitivity in head and neck squamous cell carcinoma. Proteomics. 15, 383-393. [PubMed]

Jamdhade, M., Pawar, H., Chavan, S., Sathe, G., Mahale, K.N., Kulkarni, A., Dixit, T., Madugundu, A. K., Prasad, T. S. K., Harsha, H. C., Pandey, A. and Patole, M. S. (2015). Comprehensive proteomics analysis of glycosomes from Leishmania donovani. OMICS: A Journal of Integrative Biology. 19, 157-170. [PubMed] 

Syed, N., Barbhuiya, M. A., Pinto, S. M., Nirujogi, R. S., Renuse, S., Datta, K. K., Khan, A. A., Srikumar, K., Prasad, T. S. K., Vijaya Kumar, M., Kumar, R. V., Chatterjee, A., Pandey, A. and Gowda, H. (2015). Phosphotyrosine profiling identifies ephrin receptor A2 as a potential therapeutic target in esophageal squamous cell carcinoma. Proteomics. 15, 374-382. [PubMed]

Ambekar A. S., Kelkar D. S., Pinto S. M., Sharma R., Hinduja I., Zaveri K., Pandey A., Prasad T. S. K., Gowda H. and Mukherjee S. (2015). Proteomics of Follicular Fluid from Women with Polycystic Ovary Syndrome Suggests Molecular Defects in Follicular Development. Journal of Clinical Endocrinology & Metabolism. 100, 744-753. [PubMed]

Harish, G., Mahadevan, A., Pruthi, N., Sreenivasamurthy, S. K., Puttamallesh, N. V., Prasad, T. S. K., Shankar S. K. and Bharath M. M. S (2015). Characterization of traumatic brain injury in human brains reveals distinct cellular and molecular changes in contusion and pericontusion. Journal of Neurochemistry. 134, 156-172. [PubMed] 

Reddy, P. J., Ray, S., Sathe, G. J., Prasad, T. S. K., Rapole, S., Panda, D. and Srivastava, S. (2015). Proteomics analyses of Bacillus subtilis after treatment with Plumbagin, a plant-derived naphthoquinone. OMICS: A Journal of Integrative Biology. 19, 12-23. [PubMed]

2014 (Number of publications - 20)

Kim, M. S., Pinto, S. M., Getnet, D., Nirujogi, R. S., Manda, S. S., Chaerkady, R., Madugundu, A. K., Kelkar, D. S., Isserlin, R., Jain, S., Thomas, J. K., Muthusamy, B., Leal-Rojas, P., Kumar, P., Sahasrabuddhe, N. A., Balakrishnan, L., Advani, J., George, B., Renuse, S., Selvan, L. D. N., Patil, A. H., Nanjappa, V., Radhakrishnan, A., Prasad, S., Subbannayya, T., Raju, R., Kumar, M., Sreenivasamurthy, S. K., Marimuthu, A., Sathe, G. J., Chavan, S., Datta, K. K., Subbannayya, Y., Sahu, A., Yelamanchi, S. D., Jayaram, S., Rajagopalan, P., Sharma, J., Murthy, K. R., Syed, N., Goel, R., Khan, A. A., Ahmad, S., Dey, G., Mudgal, K., Chatterjee, A., Huang, T. C., Zhong, J., Wu, X., Shaw, P. G., Freed, D., Zahari, M. S., Mukherjee, K. K., Shankar, S., Mahadevan, A., Lam, H., Mitchell, C. J., Shankar, S. K., Satishchandra, P., Schroeder, J. T., Sirdeshmukh, R., Maitra, A., Leach, S. D., Drake, C. G., Halushka, M. K., Prasad, T. S. K., Hruban, R. H., Kerr, C. L., Bader, G. D., Iacobuzio-Donahue, C. A., Gowda, H. and Pandey, A. (2014). A draft map of the human proteome. Nature.  509, 575-581. [PubMed]

Sahu, A., Kumar, S., Sreenivasamurthy, S. K., Selvan, L. D. N., Madugundu, A. K., Yelamanchi, S. D., Puttamallesh, V. N., Dey, G., Anil, A. K., Srinivasan, A., Mukherjee, K. K., Gowda, H., Satishchandra, P., Mahadevan, A., Pandey, A., Prasad, T. S. K.* and Shankar, S. K. (2014). Host response profile of human brain proteome in toxoplasma encephalitis co-infected with HIV. Clinical Proteomics11, 39. [PubMed] (*Corresponding author)

Kelkar, D. S., Provost. E., Chaerkady, R., Muthusamy, B., Manda, S. S., Subbannayya, T., Selvan, L. D. N., Wang, C. H., Datta, K. K., Woo, S., Dwivedi, S. B., Renuse, S., Getnet, D., Huang, T. C., Kim, M. S., Pinto, S. M., Mitchell, C. J., Madugundu, A. K., Kumar, P., Sharma, J. Advani, J., Dey, G., Balakrishnan, L., Syed, N., Nanjappa, V., Subbannayya, Y., Goel, R., Prasad, T. S. K., Bafna, V., Sirdeshmukh, R., Gowda, H., Wang, C., Leach, S. D. and Pandey, A. (2014). Annotation of the zebrafish genome through an integrated transcriptomic and proteomic analysis. Molecular and Cellular Proteomics. 13, 3184-98. [PubMed]

Mohanty, A. K., Prasad, T. S. K., Garg, S. and Kumar, A. (2014). "Proteogenomics of Vector Mosquitoes: Progress and Prospects" In: Major Tropical Diseases: Public Health Perspective. Ashwani Kumar, Savio Rodrigues and Amit Dias Editors. Broadway Publication House. pp 38-50.

Renuse, S., Madugundu, A. K., Kumar, P., Nair, B., Gowda, H., Prasad, T. S. K. and Pandey, A. (2014). Proteomic analysis and genome annotation of Pichia pastoris, a recombinant protein expression host. Proteomics. 14, 2769-79. [PubMed]

Pawar, H., Renuse, S., Khobragade, S. N., Chavan, S., Sathe, G., Kumar, P., Mahale, K. N., Gore, K., Kulkarni, A., Dixit, T., Raju, R., Prasad, T. S. K., Harsha, H. C., Patole, M. S. and Pandey, A. (2014). Neglected tropical diseases and omics science: Proteogenomics analysis of the promastigote stage of Leishmania major parasite. OMICS: A Journal of Integrative Biology. 18, 499-512. [PubMed] 

Selvan, L. D. N., Kaviyil, J. E., Nirujogi, R. S., Muthusamy, B., Puttamallesh, V. N., Subbannayya, T., Syed, N., Radhakrishnan, A., Kelkar, D. S., Ahmad, S., Pinto, S. M., Kumar, P., Madugundu, A. K., Nair, B., Chatterjee, A., Pandey, A., Ravikumar, R., Gowda, H.* and Prasad, T. S. K.* (2014). Proteogenomic analysis of pathogenic yeast Cryptococcus neoformans using high resolution mass spectrometry. Clinical Proteomics. 11, 5.  [PubMed] (*Corresponding author)

Selvan, L. D. N., Renuse, S., Jyothi, E. K., Sharma, J., Pinto, S. M., Yelamanchi, S. D., Puttamallesh, V. N., Ravikumar, R., Pandey, A.*, Prasad, T. S. K.* and Harsha, H. C.* (2014). Phosphoproteome of Cryptococcus neoformans. Journal of Proteomics. 97, 287-95. [PubMed] (*Corresponding author)

Nirujogi, R. S., Pawar, H., Renuse, S., Kumar, P., Chavan, S., Sathe, G. J., Sharma, J., Khobragade, S., Pande, J., Modak, B., Prasad, T. S. K., Harsha, H. C., Patole, M. S. and Pandey, A. (2014). Moving from unsequenced to sequenced genome: reanalysis of the proteome of Leishmania donovani. Journal of Proteomics. 97, 48-61. [PubMed]

Khan, A. A., Sandhya, V. K., Singh, P., Parthasarathy, D., Kumar, A., Advani, J., Gattu, R., Ranjit, D. V., Vaidyanathan, R., Mathur, P. P., Prasad, T. S. K., Gabhann, F. M., Pandey, A., Raju, R. and Gowda, H. (2014). Signaling network map of endothelial TEK tyrosine kinase. Journal of Signal Transduction2014, 173026. [PubMed]

Manda, S., Nirujogi, R. S., Pinto, S., Kim, M. S., Datta, K., Sirdeshmukh, R., Prasad, T. S. K., Thongboonkerd, V., Pandey, A. and Gowda, H. (2014). Identification and characterization of proteins encoded by chromosome 12 as part of Chromosome-centric Human Proteome Project. Journal of Proteome Research.  13, 3166-3177. [PubMed] 

Pinto, S. M., Manda, S. S., Kim, M. S., Taylor, K., Selvan, L. D. N., Balakrishnan, L., Subbannayya, T., Yan, F., Prasad, T. S. K., Gowda, H., Lee, C., Hancock, W. S. and Pandey, A. (2014). Functional annotation of proteome encoded by human chromosome 22.  Journal of Proteome Research. 13, 2749-2760. [PubMed]

Murthy, K. R., Goel, R., Subbannayya, Y., Jacob, H. K. C., Murthy, P. R., Srikanth, S. M., Patil, A. H., Sharma, R., Sahasrabuddhe, N. A., Parashar, A., Nair, B. G., Krishna V., Prasad, T. S. K., Gowda, H. and Pandey, A. (2014). Proteomic analysis of human vitreous humor. Clinical Proteomics. 11, 29.  [PubMed]

Dwivedi, S. B., Muthusamy, B., Kumar, P., Kim, M. S., Nirujogi, R. S., Getnet, D., Ahiakonu, P., Dey, G., Nair, B., Gowda, H., Prasad, T. S. K., Kumar, N., Pandey, A. and Okulate, M. (2014). Brain proteomics of Anopheles gambiaeOMICS: A Journal of Integrative Biology.  18, 421-37. [PubMed] 

Raju, R., Palappetta, S. M., Sandhya, V. K., Sahu, A., Alipoor, A., Balakrishnan, L., Advani, J., George, B., Kini, K. R., Prashanth, G. N., Prakash, H. S., Prasad, T. S. K., Chang, Y., Chen, L., Pandey, A. and Gowda, H. (2014). A network map of FGF-1/FGFR signaling system. Journal of Signal Transduction. 8, 165-170. [PubMed]

Zhong, J., Sharma, J., Raju, R., Palapetta, S. M., Prasad, T. S. K., Huang, T. C., Yoda, A.,  Tyner, J. W., van Bodegom, D., Weinstock, D. M., Ziegler, S. F. and Pandey, A. (2014). TSLP signaling pathway map: A platform for analysis of TSLP mediated signaling. Database. bau007. [PubMed]

Balakrishnan, L., Nirujogi, R. S., Ahmad, S., Bhattacharjee, M.,  Srikanth, S. M., Renuse, S., Kelkar, D. S., Subbannayya, Y.,  Raju, R.,  Goel, R., Thomas, J. K., Kaur, N., Dhillon, M., Tankala, S. G., Jois, R., Vasudev, V., Ramachandra, Y. L., Sahasrabuddhe, N. A., Prasad, T. S. K., Mohan, S., Gowda, H., Shankar, S. and Pandey, A. (2014). Proteomic analysis of human osteoarthritis synovial fluid. Clinical Proteomics. 11, 6.   [PubMed] 

Balakrishnan, L., Bhattacharjee, M., Ahmad, S., Nirujogi, R. S., Renuse, S., Subbannayya, Y., Marimuthu, A., Srikanth, S. M., Raju, R., Dhillon, M., Kaur, N., Jois, R., Vasudev, V., Ramachandra, Y. L., Sahasrabuddhe, N. A., Prasad, T. S. K., Mohan, S., Gowda, H., Shankar, S. and Pandey, A. (2014). Differential proteomic analysis of synovial fluid from rheumatoid arthritis and osteoarthritis patients. Clinical Proteomics. 11, 1.  [PubMed] 

Thomas, J. K., Kim, M. S., Balakrishnan, L., Nanjappa, V., Raju, R., Marimuthu, A., Radhakrishnan, A., Muthusamy, B., Khan, A. A., Sakamuri, S., Tankala, S. G., Singal, M., Nair, B., Sirdeshmukh, R., Chatterjee, A., Prasad, T. S. K., Maitra, A., Gowda, H., Hruban, R. H. and Pandey, A. (2014). Pancreatic Cancer Database: An integrative resource for pancreatic cancer. Cancer Biology and Therapy. 15, 8. [PubMed]

Nanjappa, V., Thomas, J. K., Marimuthu, A., Muthusamy, B., Radhakrishnan, A., Sharma, R., Khan, A. A., Balakrishnan, L., Sahasrabuddhe, N., Kumar, S., Jhaveri, B. N., Sheth, K. V., Khatana, R. K., Shaw, P. G., Srikanth, S. M., Mathur, P. P., Shankar, S., Nagaraja, D., Christopher, R., Mathivanan, S., Raju, R., Sirdeshmukh, R., Chatterjee, A., Simpson, R. J., Harsha, H. C., Pandey, A.* and Prasad, T. S. K.* (2014). Plasma Proteome Database as a resource for proteomics research: 2014 update. Nucleic Acids Research. 42, D959-D965. [PubMed] (*Corresponding author)

2013 (Number of publications - 13)

Puttamallesh, V. N., Sreenivasamurthy, S. K., Singh, P. K., Harsha, H. C., Ganjiwale, A., Broor, S., Pandey, A.*, Narayana, J.* and Prasad, T. S. K.* (2013). Proteomic profiling of serum samples from chikungunya infected patients provides insights into host response. Clinical Proteomics. 10, 14. [PubMed] (*Corresponding author)

Bhattacharjee, M., Sharma, R., Goel, R., Balakrishnan, L., Renuse, S., Advani, J.,  Shantal, T. G., Verma, R., Pinto, S. M., Nirujogi, R. S., Nair, B., Prasad, T. S. K., Harsha, H. C., Jois, R., Shankar, S. and Pandey, A. (2013). A Multilectin affinity approach for  comparative glycoprotein profiling of rheumatoid arthritis and spondyloarthropathy. Clinical Proteomics. 10, 11. [PubMed] 

Goel, R., Murthy, K., Srikanth, S. M., Pinto, S. M., Bhattacharjee, M., Kelkar, D. S., Madugundu, A. K., Dey, G., Mohan, S. S., Krishna, V., Prasad, T. S. K., Chakravarti, S., Harsha, H. C. and Pandey, A. (2013). Characterizing the normal proteome of human ciliary body. Clinical Proteomics. 10, 9. [PubMed] 

Prasad, T. S. K.*, Verma, R., Kumar, S., Nirujogi, R. S., Sathe, G. J., Madugundu, A. K., Sharma, J., Puttamallesh, V. N., Ganjiwale, A., Myneedu, V. P., Chatterjee, A., Pandey, A.*, Harsha, H. C. and Narayana, J.* (2013). Proteomic analysis of purified protein derivative of Mycobacterium tuberculosis. Clinical Proteomics. 10, 8. [PubMed] (*Corresponding author)

Sreenivasamurthy, S. K., Dey, G., Ramu, M., Kumar, M., Gupta, M. K., Mohanty, A. K., Harsha, H. C., Sharma, P., Kumar, N., Pandey, A., Kumar, A. and Prasad, T. S. K.* (2013). A compendium of molecules involved in vector-pathogen interactions pertaining to malaria. Malaria Journal. 12, 216. [PubMed] (*Corresponding author)

Ambekar, S. A., Nirujogi, R. S., Srikanth, S. M., Chavan, S., Kelkar, D. S., Hinduja, I., Zaveri, K., Prasad, T. S. K., Harsha, H. C., Pandey, A. and Mukherjee, S. (2013). Proteomic analysis of human follicular fluid: A new perspective towards understanding folliculogenesis. Journal of Proteomics. 87, 68-77. [PubMed]

Sandhya, V. K., Raju, R., Verma, R., Advani, J., Sharma, R., Radhakrishnan, A., Nanjappa, V., Narayana, J., Somani, B. L., Mukherjee, K. K., Pandey, A., Christopher, R. and Prasad, T. S. K.* (2013). A network map of BDNF/TRKB and BDNF/p75NTR signaling system. Journal of Cell Communication and Signaling. 4, 301-307. [PubMed] (*Corresponding author)

Balakrishnan, L., Soman, S., Patil, Y. B., Advani, J., Thomas, J. K., Venkatesh, D. D., Urmila, K. K., Harsha, H. C., Prasad, T. S. K., Raju, R., Pandey, A., Dimitriadis, E and Chatterjee, A. (2013). IL-11/IL11RA receptor mediated signaling: a web accessible knowledgebase. Cell Communication and Adhesion. 20, 81-86. [PubMed]

Subbannayya, T., Balakrishnan, L., Sudarshan, G., Advani, J., Kumar, S., Mahmood, R.,  Nair, B., Sirdeshmukh, R., Mukherjee, K. K., Umathe, S. N., Raju, R. and Prasad, T. S. K.* (2013). An integrated map of corticotropin-releasing hormone signaling pathway. Journal of Cell Communication and Signaling. 4, 295-300. [PubMed] (*Corresponding author)

Venugopal, A. K., Kumar, G. S. S., Selvan, L. D. N., Mahadevan, A., Renuse, S., Kumar, P., Pawar, H., Sahasrabuddhe, N. A., Suja, M. S., Ramachandra, Y. L., Prasad, T. S. K., Madhusudhana, S. N., Harsha, H. C., Chaerkady, R., Satishchandra, P., Pandey, A. and Shankar, S. K. (2013). Quantitative proteomics for identifying biomarkers for Rabies. Clinical Proteomics. 10, 3. [PubMed]

Muthusamy, B., Thomas, J. K., Prasad, T. S. K. and Pandey, A. (2013). Access guide to Human Proteinpedia. Current Protocols in Bioinformatics. 41, 1.21.1-1.21.15. [PubMed]

Kashyap, M. K., Pawar, H., Keerthikumar, S., Sharma, J., Goel, R., Mahmood, R., Vijaya Kumar, M., Veerendra Kumar, K. V., Pandey, A., Kumar, R. V., Prasad, T. S. K.* and Harsha, H. C.* (2013). Evaluation of protein expression pattern of stanniocalcin 2, insulin-like growth factor-binding protein 7, inhibin beta A and four and a half LIM domains 1 in esophageal squamous cell carcinoma. Cancer Biomarkers. 12, 1-9. [PubMed] (*Corresponding author)

Soman, S., Raju, R., Sandhya, V. K., Advani, J., Khan, A. A., Harsha, H. C., Prasad, T. S. K., Sudhakaran, P. R., Pandey, A. and Adishesha, P. K. (2013). A multicellular signal transduction network of AGE/RAGE signaling. Journal of Cell Communication and Signaling. 7, 19-23. [PubMed]

2012 (Number of publications -11)

Dey, G., Radhakrishnan, A., Syed, N., Thomas, J. K., Nadig, A., Srikumar, K., Mathur, P. P., Pandey, A., Lin, S. K., Raju, R. and Prasad, T. S. K*. (2012). Signaling network of Oncostatin M pathway. Journal of Cell Communication and Signaling. 7, 103-108. [PubMed] (*Corresponding author)

Marimuthu, A., Subbannayya, Y., Sahasrabuddhe, N. A., Balakrishnan, L., Syed, N., Sekhar, N. R., Katte, T. V., Pinto, S. M., Srikanth, S. M., Kumar, P., Pawar, H., Kashyap, M. K., Maharudraiah, J., Ashktorab, H., Smoot, D. T., Ramaswamy, G., Kumar, R. V., Cheng, Y., Meltzer, S. J., Roa, J. C., Chaerkady, R., Prasad, T. S. K., Harsha, H. C., Chatterjee, A. and Pandey, A. (2012). SILAC-based quantitative proteomic analysis of gastric cancer secretome. Proteomics - Clinical Applications. [PubMed]

Kumar, G. S. S., Venugopal, A. K., Mahadevan, A., Renuse, S., Harsha, H. C., Sahasrabuddhe, N. A., Pawar, H., Sharma, R., Kumar, P., Rajagopalan, S., Waddell, K., Ramachandra, Y. L., Satishchandra, P., Chaerkady, R., Prasad, T. S. K., Shankar, S. K. and Pandey, A. (2012). Quantitative proteomics for identifying biomarkers for tuberculous meningitis. Clinical Proteomics. 9, 12-24 [PubMed]

Pawar, H., Maharudraiah J., Kashyap, M.K., Sharma, J., Srikanth, M.S., Choudhary, R., Chavan, S., Sathe, G. J., Manju, H.C., Veerendra Kumar, K. V., Vijayakumar, M., Sirdeshmukh, R., Harsha, H.C., Prasad, T. S. K., Pandey, A. and Kumar, R. V. (2012). Downregulation of cornulin in esophageal squamous cell carcinoma. Acta Histochemica. 115, 89-99. [PubMed]

Kumar, G. S. S., Venugopal, A. K., Kashyap, M. K., Raju, R., Marimuthu, A., Palapetta, S. M., Subbannayya, Y., Goel, R., Chawla, A., Dikshit, J. B., Tata, P., Harsha, H. C., Maharudraiah, J., Ramachandra, Y. L., Satishchandra, P., Prasad, T. S. K., Pandey, A., Mahadevan, A. and Shankar, S. K. (2012). Gene expression profiling of tuberculous meningitis co-infected with HIV. Journal of Proteomics and Bioinformatics. 5, 235-244.  [PubMed]

Renuse. S., Harsha, H. C., Kumar, P., Acharya, P. K., Sharma, J., Goel, R., Kumar, G. S. S., Raju, R., Prasad, T. S. K., Slotta, T. and Pandey, A. (2012). Proteomic analysis of an unsequenced plant - Mangifera indica. Journal of Proteomics. 75, 5793-5796. [PubMed]

Kalra, H., Simpson, R. J., Ji, H., Aikawa, E., Altevogt, P., Askenase, P., Bond, V. C., Borràs, F. E., Breakefield, X., Budnik, V., Buzas, E., Camussi, G., Clayton, A., Cocucci, E., Falcon-Perez, J. M., Gabrielsson, S., Gho, Y. S., Gupta, D., Harsha, H. C., Hendrix, A., Hill, A. F., Inaal, J. M., Jenster, G., Kiang, L. S., Krämer-Albers, E-M., Llorente, A., Lötvall, J., Mincheva-Nilsson, L., Nazarenko, I., Nieuwland, R., Nolte-'t Hoen, E. N. M., Pandey, A., Patel, T., Piper, M. G., Pluchino, S., Prasad, T. S. K., Rajendran, L., Raposo, G., Record, M., Reid, G. E., Sánchez-Madrid, F., Schiffelers, R. M., Siljander, P., Stoorvogel, W., Taylor, D., Thery, C., Valadi, H., van Balkom, B. W. M., Vázquez, J., Vidal, M., Yáñez-Mó, M., Zoeller, M. and Mathivanan, S. (2012). Vesiclepedia: A compendium for extracellular vesicles with continuous community annotation. PLoS Biology. 10, e1001450. [PubMed]

Radhakrishnan, A., Raju, R., Tuladhar, N., Subbannayya, T., Thomas, J. K., Goel, R., Telikicherla, D., Palapetta, S. M., Rahiman, B. A., Venkatesh, D. D., Urmila, K. K., Harsha, H. C., Mathur, P. P., Prasad, T. S. K., Pandey, A., Shemanko, C. and Chatterjee, A. (2012). A pathway map of prolactin signaling. Journal of Cell Communication and Signaling. 6, 169-173. [PubMed]

Bhattacharjee, M., Raju, R., Radhakrishnan, A., Nanjappa, V., Muthusamy, B., Singh, K., Kuppusaami, D., Lingala, B. T., Pan, A., Mathur, P. P., Harsha, H. C., Prasad, T. S. K., Atkins, G. J., Pandey, A. and Chatterjee, A. (2012). A bioinformatics resource for TWEAK-Fn14 signaling pathway. Journal of Signal Transduction. Article ID 376470. [PubMed]

Prasad, T. S. K. *, Harsha, H. C., Keerthikumar, S., Sekhar, N. R., Selvan, L. D. N., Kumar, P., Pinto, S. M., Muthusamy, B., Subbannayya, Y., Renuse, S., Chaerkady, R., Mathur, P. P., Ravikumar, R. and Pandey, A. (2012). Proteogenomic analysis of Candida glabrata using high resolution mass spectrometry. Journal of Proteome Research. 11, 247-260. [PubMed] (*Corresponding author)

Goel, R.*, Harsha, H. C., Pandey, A. and Prasad, T. S. K.* (2012). Human Protein Reference Database and Human Proteinpedia as resources for phosphoproteome analysis. Molecular Biosystems. 8, 453-63. [PubMed] (*Corresponding author)

2011 (Number of publications -11)

Goel, R., Raju, R., Maharudraiah, J., Kumar, G. S. S., Ghosh, K., Kumar, A., Lashmi, P. T., Sharma, J., Sharma, R., Balakrishnan, L., Pan, A., Kandasamy, K., Christopher, R., Krishna, V., Mohan, S. S., Harsha, H. C., Mathur, P. P., Pandey, A. and Prasad, T. S. K.* (2011). A signaling network of thyroid-stimulating hormone. Journal of Proteomics and Bioinformatics. 4, 238-241. [PubMed] (*Corresponding author)

Telikicherla, D., Ambekar, A., Palapetta, S. M., Dwivedi, S. B., Raju, R., Sharma, J., Prasad, T. S. K., Ramachandra, Y. L., Mohan, S. S., Maharudraiah, J., Mukherjee, S. and Pandey, A. (2011). A comprehensive curated resource for follicle stimulating hormone signaling. BMC Research Notes. 4, 408. [PubMed]

Kelkar, D. S., Kumar, D., Kumar, P., Balakrishnan, L., Muthusamy, B., Yadav, A. K., Shrivastava, P., Marimuthu, A., Anand, S., Sundaram, H., Kingsbury, R., Harsha, H. C., Nair, B., Prasad, T. S. K., Chauhan, D. S., Katoch, K., Katoch, V. M., Kumar, P., Chaerkady, R., Ramachandran, S., Dash D. and Pandey, A. (2011). Proteogenomic analysis of Mycobacterium tuberculosis by high resolution mass spectrometry. Molecular and Cellular Proteomics. Oct 3. M111.011627. [PubMed]

Nanjappa, V., Raju, R., Muthusamy, B., Sharma, J., Thomas, J. K., Nidhina, P. A. H., Harsha, H. C., Pandey, A., Anilkumar G. and Prasad, T. S. K.* (2011). A comprehensive curated reaction map of leptin signaling pathway. Journal of Proteomics and Bioinformatics. 4, 184-189. [PubMed]. (*Corresponding author)

Chaerkady, R., Kelkar, D. S., Muthusamy, B., Kandasamy, K., Dwivedi, S. B., Sahasrabuddhe, N. A., Kim, M-S., Renuse, S., Pinto, S. M., Sharma, R., Pawar, H., Sekhar, N. R., Mohanty, A. K., Getnet, D., Yang, Y., Zhong, J., Dash, A. P., MacCallum, R. M., Delanghe, B., Mlambo, G., Kumar, A., Prasad, T. S. K., Okulate, M., Kumar, N. and Pandey, A. (2011). A proteogenomic analysis of Anopheles gambiae using high-resolution Fourier transform mass spectrometry. Genome Research. 21, 1872-1881.[PubMed]

Raju, R., Nanjappa, V., Balakrishnan, L., Radhakrishnan, A., Thomas, J. K., Sharma, J., Tian, M., Palapetta, S. M., Subbannayya, T., Sekhar, N. R., Muthusamy, B., Goel, R., Subbannayya, Y., Telikicherla, D., Bhattacharjee, M., Pinto, S., Syed, N., Srinivas, S. M., Sathe, G. J., Ahmad, S., Chavan, S. N., Kumar, G. S. S., Marimuthu, A., Prasad, T. S. K., Harsha, H. C., Rahiman, B. A., Ohara, O., Bader, G. D., Mohan, S. S., Schiemann, W. P. and Pandey, A. (2011). NetSlim: High-confidence curated signaling maps. Database. 2011, bar032. [PubMed]

Pawar, H., Kashyap, M. K., Sahasrabuddhe, N. A., Renuse, S., Harsha, H. C., Kumar, P., Sharma, J., Kandasamy, K., Marimuthu, A., Nair, B., Rajagopalan, S., Maharudraiah, J., Premalatha, C. S., Veerendra Kumar, K. V., Vijayakumar, M., Chaerkady, R., Prasad, T. S. K., Kumar, R. V. and Pandey, A. (2011) Quantitative tissue proteomics of esophageal squamous cell carcinoma for novel biomarker discovery. Cancer Biology and Therapy. 12 (6), September 15, 2011. [PubMed]

Raju, R., Balakrishnan, L., Nanjappa, V., Bhattacharjee, M., Getnet, D., Muthusamy, B., Thomas, J. K., Sharma, J, Rahiman, B. A., Harsha, H. C., Shankar, S., Prasad, T. S. K., Mohan, S. S., Bader, G. D., Wani, M. R. and Pandey, A. (2011) A comprehensive manually curated reaction map of RANKL/RANK signaling pathway. Database. bar021. [PubMed]

Kumar, G. S. S., Venugopal, A. K., Selvan, L. D. N., Marimuthu, A., Keerthikumar, S., Pathare, S., Dikshit, J. B., Tata, P., Hariharan, R., Prasad, T. S. K., Harsha, H. C., Ramachandra, Y. L., Mahadevan, A., Chaerkady, R., Shankar, S. K. and Pandey, A. (2011) Gene expression profiling of tuberculous meningitis. Journal of Proteomics and Bioinformatics. 4, 98-105. [PubMed]

Marimuthu, A., Jacob, H. K. C., Jakharia, A., Subbannayya, Y., Keerthikumar, S., Kashyap, M. K., Goel, R., Balakrishnan, L., Dwivedi, S., Pathare, S., Dikshit, J. B., Maharudraiah, J., Singh, S., Kumar, G. S. S., Vijayakumar, M., Veerendra Kumar, K. V., Premalatha, C. S., Tata, P., Hariharan, R., Roa, J. C., Prasad, T. S. K., Chaerkady, R., Kumar, R. V. and Pandey, A. (2011) Gene expression profiling of gastric cancer. Journal of Proteomics and Bioinformatics. 4, 74-82.[PubMed]

Prasad, T. S. K. and Chaerkady, R. (2011) “Application of Quantitative Proteomic Approaches to Toxicology.” In: Handbook of Systems Toxicology. Daniel A. Casciano and Saura C. Sahu Editors. John Wiley & Sons Limited. pp, 217-226.

2010 (Number of publications -5)

Prasad, T. S. K., Keerthikumar, S., Chaerkady, R., Kandasamy, K., Renuse, S., Marimuthu, A., Venugopal, A. K., Thomas, J. K., Jacob, H. K. C., Goel, R., Pawar, H., Sahasrabuddhe, N. A., Krishna, V., Nair, B. G., Gucek, M., Cole, R. N., Ravikumar, R., Harsha, H. C. and Pandey, A. (2010) Comparative proteomic analysis of Candida albicans and Candida glabrata. Clinical Proteomics 6, 163-173. [PubMed]

Goel, R., Muthusamy, B., Pandey, A. and Prasad, T. S. K.* (2010) Human Protein Reference Database and Human Proteinpedia as discovery resources for molecular biotechnology. Molecular Biotechnology Oct 7. [PubMed] (*Corresponding author)

Kashyap, M .K., Harsha, H. C., Renuse, S., Pawar, H., Sahasrabuddhe, N. A., Kim, M. S., Marimuthu, A., Keerthikumar, S., Muthusamy, B., Kandasamy, K., Subbannayya, Y., Prasad, T. S. K., Mahmood, R., Chaerkady, R., Meltzer, S. J., Kumar, R. V., Rustgi, A. K. and Pandey, A. (2010) SILAC-based quantitative proteomic approach to identify potential biomarkers from the esophageal squamous cell carcinoma secretome. Cancer Biology and Therapy 10, 796-810. [PubMed]

Kandasamy, K., Mohan, S. S., Raju, R., Keerthikumar, S., Kumar, G. S. S., Venugopal, A. K., Telikicherla, D., Navarro, J. D., Mathivanan, S., Pecquet, C., Gollapudi, S. K., Tattikota, S. G., Mohan, S., Padhukasahasram, H., Subbannayya, Y., Goel, R., Jacob, H. K. C., Zhong, J., Sekhar, R., Nanjappa, V., Balakrishnan, L., Subbaiah, R., Ramachandra, Y. L., Rahiman, B. A., Prasad, T. S. K., Lin, J., Houtman, J. C. D., Desiderio, S., Renauld, J., Constantinescu, S. N., Ohara, O., Hirano, T., Kubo, M., Singh, S., Khatri, P., Draghici, S., Bader, G. D., Sander, C., Leonard, W. J. and Pandey, A. (2010) NetPath: A public resource of curated signal transduction pathways. Genome Biology 11, R3. [PubMed]

Kashyap, M. K., Marimuthu, A., Peri, S., Kumar, G. S. S., Jacob, H. C. K., Prasad, T. S. K., Mahmood, R., Veerendra Kumar, K. V., Vijayakumar, M., Meltzer, S. J., Montgomery, E. A., Kumar, R. V. and Pandey, A. (2010) Overexpression of periostin and lumican in esophageal squamous cell carcinoma. Cancers 2, 133-142. [PubMed]

2009 (Number of publications -5)

Kandasamy, K., Keerthikumar, S., Raju, R., Prasad, T. S. K., Ramachandra, Y. L., Mohan, S. and Pandey, A. (2009) PathBuilder - open source software for annotating and developing pathway resources. Bioinformatics 25, 2860-2862. [PubMed]

Prasad, T. S. K., Kandasamy, K. and Pandey, A. (2009) “Human Protein Reference Database and Human Proteinpedia as discovery tools for systems biology.” In: Reverse Chemical Genetics: Methods and Protocols. Hisashi Koga, Editor. (Humana Press, Totowa, New Jersey, USA) Methods in Molecular Biology 577, 67-79. [PubMed]

Prasad, T. S. K.*, Goel, R., Kandasamy, K., Keerthikumar, S., Kumar, S., Mathivanan, S., Telikicherla, D., Raju, R., Shafreen, B., Venugopal, A., Balakrishnan, L., Marimuthu, A., Banerjee, S., Somanathan, D. S., Sebastian, A., Rani, S., Ray, S., Kishore, C. J. H., Kanth, S., Ahmed, M., Kashyap, M., Mohmood, R., Ramachandra, Y. L., Krishna, V., Rahiman, A. B., Mohan, S., Ranganathan, P., Ramabadran, S., Chaerkady, R. and Pandey, A. (2009) Human Protein Reference Database - 2009 update. Nucleic Acids Research 37, D767-D772. [PubMed] (*Corresponding author)

Kashyap, M., Marimuthu, A., Kishore, C. J. H., Peri, S., Keerthikumar, S., Prasad, T. S. K., Mahmood, R., Rao, S., Ranganathan, P., Vijayakumar, M., Veerendra Kumar, K. V., Montgomery, E., Kumar, R.V. and Pandey, A. (2009) Genomewide mRNA profiling of esophageal squamous cell carcinoma for identification of cancer biomarkers. Cancer Biology and Therapy 8, 16-26. [PubMed]

Kandasamy, K., Keerthikumar, S., Goel, R., Mathivanan, S., Patankar, N., Shafreen, B., Renuse, S., Pawar, H., Ramachandra, Y. L., Acharya, P. K., Ranganathan, P., Chaerkady, R., Prasad, T. S. K. and Pandey, A. (2009) Human Proteinpedia: A unified discovery resource for proteomics research. Nucleic Acids Research 37, D773-D781. [PubMed]

2008 (Number of publications -2)

Dixon, S., Fedyshyn, Y., Koh, J., Prasad, T. S. K., Chahwan, C., Chua, G., Toufighi, K., Baryshnikova, A., Hayles, J., Hoe, K., Kim, D., Park, H., Myers, C., Pandey, A., Durocher, D., Andrews, B. and Boone, C. (2008) Significant conservation of synthetic lethal genetic interaction networks between distantly-related eukaryotes. Proceedings of the National Academy of Sciences U.S.A. 105, 16653-16658. [PubMed]

Mathivanan, S.., Ahmed, M.., Ahn, N.G., Alexandre, H., Amanchy, R., Andrews, P. C., Bader, J. S., Balgley, B. M., Bantscheff, M., Bennett, K. L., Björling, E., Blagoev, B., Bose, R., Brahmachari, S. K., Burlingame, A. S., Bustelo, X. R., Cagney, G., Cantin, G. T., Cardasis, H. L., Celis, J. E., Chaerkady, R., Chu, F., Cole, P. A., Costello, C. E., Cotter, R. J., Crockett, D., DeLany, J. P., De Marzo, A. M., DeSouza, L. V., Deutsch, E. W., Dransfield, E., Drewes, G., Droit, A., Dunn, M. J., Elenitoba-Johnson, K., Ewing, R. M., Van Eyk, J., Faca, V., Falkner, J., Fang, X., Fenselau, C., Figeys, D., Gagné, P., Gelfi, C., Gevaert, K., Gimble, J. M., Gnad, F., Goel, R., Gromov, P., Hanash, S. M., Hancock, W. S., Harsha, H. C., Hart, G., Hays, F., He, F., Hebbar, P., Helsens, K., Hermeking, H., Hide, W., Hjernø, K., Hochstrasser, D. F., Hofmann, O., Horn, D. M., Hruban, R. H., Ibarrola, N., James, P., Jensen, O. N., Jensen, P. H., Jung, P., Kandasamy, K., Kheterpal, I., Kikuno, R. F., Korf, U., Körner, R., Kuster, B., Kwon, M. S., Lee, H. J., Lee, Y. J., Lefevre, M., Lehvaslaiho, M., Lescuyer, P., Levander, F., Lim, M. S., Löbke, C., Loo, J. A., Mann, M., Martens, L., Martinez-Heredia, J., McComb, M., McRedmond, J., Mehrle, A., Menon, R., Miller, C. A.., Mischak, H., Mohan, S. S., Mohmood, R., Molina, H., Moran, M. F., Morgan, J. D., Moritz, R., Morzel, M., Muddiman, D. C., Nalli, A., Navarro, J. D., Neubert, T. A., Ohara, O., Oliva, R., Omenn, G. S., Oyama, M., Paik, Y. K., Pennington, K., Pepperkok. R., Periaswamy, B., Petricoin, E. F., Poirier, G. G., Prasad, T. S. K., Purvine, S. O., Rahiman, B. A., Ramachandran, P., Ramachandra, Y. L., Rice, R. H., Rick, J., Ronnholm, R. H., Salonen, J., Sanchez, J. C., Sayd, T., Seshi, B., Shankari, K., Sheng, S. J., Shetty, V., Shivakumar, K., Simpson, R. J., Sirdeshmukh, R., Siu, K. W., Smith, J. C., Smith, R. D., States D. J., Sugano, S., Sullivan, M., Superti-Furga G., Takatalo, M., Thongboonkerd, V., Trinidad, J. C., Uhlen, M., Vandekerckhove, J., Vasilescu, J., Veenstra, T. D., Vidal-Taboada, J. M., Vihinen, M., Wait, R., Wang, X., Wiemann, S., Wu, B., Xu, T., Yates, J. R., Zhong, J., Zhou, M., Zhu, Y., Zurbig, P. and Pandey, A. (2008). Human Proteinpedia enables sharing of human protein data. Nature Biotechnology 26, 164-167. [PubMed]

2007 (Number of publications - 1)

Prasad, T. S. K. and Bhat, D. J. (2007) “Fungi and Development of Mycoinsecticides.” In: Fungi: Multifaceted Microbes. B. N. Ganguli and S. K. Deshmukh (Eds.). Anamaya Publishers, New Delhi. pp. 248-271.

2006 (Number of publications - 1)

Mishra, G., Suresh, M., Kumaran, K., Kannabiran, N., Suresh, S., Bala, P., Shivakumar, K., Anuradha, N., Reddy, R., Raghavan, T. M., Menon, S., Hanumanthu, G., Gupta, M., Upendran, S., Gupta, S., Mahesh, M., Jacob, B., Matthew, P., Chatterjee, P., Arun, K. S., Sharma, S., Chandrika, K. N., Deshpande, N., Palvankar, K., Raghavnath, R., Krishnakanth, K., Karathia, H., Rekha, B., Rashmi, N. S., Vishnupriya, G., Kumar, H. G. M., Nagini, M., Kumar, G. S. S., Jose, R., Deepthi, P., Mohan, S. S., Gandhi, T. K. B., Harsha, H. C., Deshpande, K. S., Sarker, M., Prasad, T. S. K. and Pandey, A.(2006) Human Protein Reference Database - 2006 update. Nucleic Acids Research 34, D411-D414. [PubMed]

2005 (Number of publications - 2)

Muthusamy, B., Hanumanthu, G., Reshmi, R., Sriranjini, S., Suresh, S., Rekha, B., Srinivas, D., Karthick, L., Vrushabendra, B. M., Sharma, S., Mishra, G., Rashmi, B. P., Kadekar, S., Chatterjee, P., Mangala, K. S., Shivashankar, H. N., Chandrika, K. N., Deshpande, N., Suresh, M., Kannabiran, N., Niranjan, V., Nalli, A., Prasad, T. S. K., Arun, K. S., Reddy, R., Chandran, S., Jadhav, T., Julie, D., Mahesh, M., John, S. L., Palvankar, K., Sudhir, D., Bala, P., Jithesh, M. K., Rashmi, N. S., Vishnupriya, G., Dhar, K., Reshma, S., Chaerkady, R., Prasad, C. K., Gandhi, T. K. B., Harsha, H. C., Mohan, S. S., Deshpande, K. S., Sarker, M. and Pandey, A. (2005) Plasma Proteome Database as a resource for proteomics research. Proteomics 5, 3531-3536. [PubMed]

Gandhi, T. K. B., Chandran, S., Peri, S., Saravana, R., Amanchy, R., Prasad, T. S. K. and Pandey, A. (2005) A bioinformatics analysis of protein tyrosine phosphatases in humans. DNA Research 12, 79-89. [PubMed]

2004 (Number of publications - 1)

Prasad, T. S. K., Kumar, A. and Bhat, D. J. (2004) New records of Aschersonia species from the forests of Western Ghats, India. Journal of Mycology and Plant Pathology 34, 7-14.

2003 (Number of publications - 3)

Prasad, T. S. K., Asha, L. G. and Bhat, D. J. (2003) A new species of Memnoniella from India. Mycotaxon 85, 341-344. [PubMed]

Prasad, T. S. K., D'Souza, M. A. and Bhat, D. J. (2003) “Vermiculariopsiella Bender: Present Status of Species Diversity.” In: Frontiers of Fungal Diversity in India (Prof. Kamal Festschrift). G.P. Rao, C. Manoharachari, D. J. Bhat, R. C. Rajak and T. N. Lakhanpal (Eds.). International Book Distributing Co. Lucknow, India. pp: 503-511.

Prasad, T. S. K., Kumar, A. and Bhat, D. J. (2003) “Mosquito larvicidal and pathogenic fungi from Goa.” In: Prospects and Problems of Environment: Across the Millennium. M. N. Madhyastha, K. R. Shridhar and A. Lakshmi (Eds). Daya Publishing House, Delhi, India. pp, 142-149. [PubMed]

2002 (Number of publications - 3)

Prasad, T. S. K. and Bhat, D. J. (2002) Speiropsis rogergoosensis sp. nov. from India. Mycotaxon 82, 127-132. [PubMed]

Prasad, T. S. K. and Bhat, D. J. (2002) A new species of Phalangispora from India. Mycotaxon 83, 403-407. [PubMed]

Prasad, T. S. K. and Bhat, D. J. (2002) Stellomyces kendrickii, a new hyphomycete from India. Mycotaxon 84, 61-63. [PubMed]

 
Research Support

 

Title of Project

Funding Agency

Role

1

Development of epitope based diagnostic gadget for detection of Mycobacterium tuberculosis in the Indian population

Department of Science and Technology
Government of India

PI

2

Establishment of National Database on Tuberculosis (TB) - Phase II

Department of Biotechnology
Government of India

PI

 
Completed Research Projects

 

Title of Project

Funding Agency

Role

1

Genomic and Proteomic Analysis of Chronic Meningitis as a part of DBT Programme Support on Neuroproteomics for Proteomic Investigation of Neurological Disorders

Department of Biotechnology
Government of India

Co-PI

2

Development of Mouse Protein Reference Database

Department of Biotechnology
Government of India

PI

3

Establishment of National Database on Tuberculosis

Department of Biotechnology
Government of India

PI

4

A functional analysis of Protein Tyrosine Phosphatases in EGF Receptor signal transduction pathway using a novel substrate trapping mutant strategy

Department of Biotechnology
Government of India

PI

5 Proteomic Profiling of squamous cell carcinoma of esophagus   Department of Biotechnology
Government of India
PI
 
Associations
Editorial Board member - Journal of Proteomics and Bioinformatics, Journal of Proteins and Proteomics
Reviewer - Molecular and Cellular Proteomics, PLOS One, Journal of Proteomics, Proteomics, Trends in Molecular Medicine, Genomics, BMC Bioinformatics, Bioinformatics, BBA - Proteins and Proteomics, Database (Oxford Journals), DNA Research, Bioinformatics and Biology Insights, Indian Journal of Medical Research, Journal of Ethnopharmacology, Journal of Neurosciences in Rural Practice, International Journal of Rheumatic Diseases, International Journal of Molecular Sciences
2013-present, Member, Human Proteome Organization (HUPO)
2013-present, Life Member, National Academy of Vector Borne Diseases, India
2011-present, Member of Executive Council, Proteomics Society, India
2002-2007, Member, Mycological Society of India
2004-2007, Member, Society for Mycology and Plant Pathology
 
 
National Academic Workshops co-ordinated

 

Title of Workshop

Date Venue
1 Intensive Workshop on High-Resolution Mass Spectrometry   June 15 - 23, 2013 IOB
2 Workshop on Clinical Proteomics   July 29 - August 1, 2013 IOB
3 Workshop on Bioinformatics for Human Genome Analysis   August 24 - 27, 2013 IOB
4 Workshop on Quantitative Proteomic Technologies   August 28 - 31, 2013 IOB
5 Intensive Workshop on Clinical Proteomics   October 24 - 27, 2013 IOB
6 Intensive Workshop on Proteogenomics and Mass Spectrometry Data Analysis
  October 28 - 31, 2013 IOB
7 Intensive Workshop on Bioinformatics for Human Genome Analysis   November 13 - 16, 2013 IOB
8 Intensive Workshop on Clinical Proteomics   January 6 - 9, 2014 IOB
9 Intensive Workshop on Human Genome Analysis   February 5 - 8, 2014 IOB
10 Workshop on Fundamentals of Mass Spectrometry-based Proteomics for Beginners   March 6 - 8, 2014 IOB
11 Seminar on Fundamentals of Mass spectrometry for Biomedical Research   March 9 - 10, 2014 IOB
12 Training in Clinical Proteomics (TICP) Workshop   March 27 - 30, 2014 IOB
13 Workshop on Fundamentals of Mass Spectrometry-based Proteomics for Beginners   April 26 - 28, 2014 IOB
14 Clinical proteomics workshop   June 14 - 16, 2014 IOB
15 Workshop on human transcriptome analysis   June 24 - 25, 2014 IOB
16 Workshop on human genome analysis   July 28 - 30, 2014 IOB
17 Workshop on fundamentals of mass spectrometry-based proteomics for beginners   July 31 - August 02, 2014 IOB
18 Workshop on mass spectrometry-based metabolomics   August 03 - 04, 2014 IOB
19 Workshop on human genome analysis   September 18 - 20, 2014   IOB
20 Workshop on fundamentals of mass spectrometry-based proteomics for beginners   September 21 - 23, 2014 IOB
21 Workshop on mass spectrometry-based metabolomics   September 24 -25, 2014 IOB
22 Workshop on fundamentals of animal cell culture and functional applications
  September 26 - 28, 2014 IOB
23 Workshop on Fundamentals of Mass Spectrometry-Based Proteomics for Beginners   March 11 - 14, 2015 IOB
24 Workshop on Fundamentals of Mass Spectrometry-Based Proteomics for Beginners   October 07 - 09, 2015 IOB
25 Workshop on Mass Spectrometry based Quantitative Proteomics for Beginners   February 01 - 04, 2016 IOB
26 Workshop on fundamentals of Animal cell culture and functional applications   April 04 - 06, 2016 IOB
         
 
Invited Lectures
An invited talk on "Proteogenomic Approaches to Discover Novel Proteins" on June 19, 2015 at the "30th Indian Society for Mass Spectrometry-Summer School on Applications of Mass Spectrometry for Proteomics and Metabolomics-2015" held during June 15-20, 2015, at CSIR-Indian Institute of Chemical Technology & CSIR-Centre for Cellular and Molecular Biology, Hyderabad. Host: Dr. Suresh Kumar Aggarwal
Keynote Speaker lecture on "Proteomic and Proteogenomic Approaches as a Platform for Investigating Human Diseases" at the International conference "Genomics and Proteomics Research" held on May 28-29, 2015 in Sheraton Bangalore Hotel at Brigade Gateway, Bangalore. Host: Dr. Sanjay Bajaj
Guest of Honor and Keynote Speaker at the International Technical Seminar on "Contemporary Advances in Biotechnology & Allied Sciences," held at the Department of Biotechnology, Siddaganga Institute of Technology, Tumkur on May 20, 2015. Host: Dr. B. S. Gowrishankar and Dr. Hemant Kumar Daima
Invited Guest Lecture on "Introduction to Proteomics" at the Department of Biotechnology in the Oxford College of Engineering, Bangalore on April 29, 2015 sponsored by the Government of Karnataka - Vision Group for Science and Technology grant for Establishment of a Center for Computational Medicinal Chemistry in Drug Discovery. Host: Dr. Kusum Paul
An invited lecture on "Genomic and Proteomic approaches to study infectious diseases." at CSIR-Institute of Genomics & Integrative Biology, New Delhi, April 14, 2014. Host: Dr. Sheetal Gandotra
Expert Reviewer for evaluating student presentations in the two days conference on "Adavnces in Research and Development and Dissemination of Interdisciplinary Developments for Sustainability" held during April 25-27, 2015 at the Department of Biotechnology, R. V. College of Engineering, Bangalore organized under TEQIP-II INITIATIVE. Host: Dr. Vidya Niranjan
An invited talk on "Proteogenomic Approaches for Accurate Assembly and Annotation of Genomes" on April 16, 2015 in the Bangalore University Golden Jubilee Lecture Series (BUGJLS) April 15-16, 2015, with a theme of "Biology in the Genomics Era" organized by Centre for Applied Genetics, Department of Zoology, Bangalore University, as a part of Golden Jubilee Celebrations of Bangalore University (1964-2014). Host: Dr. M. S. Reddy
An invited talk on "Quantitative Proteomic Analysis to Discover Candidate Biomarkers and Therapeutic Targets for Human Diseases" on March 14, 2015 in the "National Institute for Mental Health and NeuroSsciences (NIMHANS) - Maastricht University Joint Workshop on Neuropsychiatry" during March 12-14, 2015 held at Convention Auditorium, NIMHANS, Bangalore. Host: Dr. G. S. Umamaheswara Rao.
An invited guest lecture on "Applications of Proteomic and Proteogenomic Approaches in Biological Research" on February 19, 2015, as a part of the 'Refresher Course in Life Science' conducted by Bangalore University at the UGC academic staff college, Jnanabharathi campus during February 18, 2015 to March 10, 2015. Host: Prof. S. K. Sarangi
Plenary Lecture on "Proteomic Approaches to Characterize Vectors and Pathogens of of Human Diseases" on January 23, 2015 at the National Conference of Institute of Pharmacy NCIP 2015 on "Infectious Diseases: Challenges and Opportunities in Research and Practice" held on January 22 - 23, 2015 at Institute of Pharmacy, Nirma University, Ahmedabad. Host: Dr. Manjunath Ghate
An invited lecture on "Proteogenomic approaches to improve assembly and annotation of newly sequenced genomes" on January 19, 2015 at the Indo-US bilateral conference and workshop on "Big Data Analysis and Translation in Disease Biology" held during January 18-22 2015 at Jawaharlal Nehru University, New Delhi. Indian Coordinators: Prof. Indira Ghosh (JNU) and Dr. Punit Kaur (AIIMS); US Coordinator: Dr. Marylyn D. Ritchie Penn State University, USA
An invited talk on "How to select Journal? What is impact factor? How impact factor is imp and calculated? Publication in Research Gate & Open access" on January 7, 2015 in the National Conference on "Research Methodology & Avenues for Grants" held at Auditorium Hall, JNARDDC Campus, National Institute of Miner's Health, Nagpur during January 7-9, 2015. Host: Dr. Shubhangi Pingle
Chaired the session on "Mass spectrometry and PTM" on December 8, 2014 during the 6th Annual Meeting of Proteomics Society, India and International Conference on "Proteomics: From Discovery to Function" held during December 6-9, 2014 at Indian Institute of Technology, Bombay. Host: Sanjeeva Srivastava
An invited talk on "Proteogenomics" as a part of Education Day (December 6, 2014) during the 6th Annual Meeting of Proteomics Society, India and International Conference on "Proteomics: From Discovery to Function" held during December 6-9, 2014 at Indian Institute of Technology, Bombay. Host: Sanjeeva Srivastava
An oral presentation on "Proteogenomic analysis of an Asian malaria vector - Anopheles stephensi" on October 6, 2014 at the 13th Human Proteome Organization (HUPO) World Congress held during October 5-8, 2014 in Madrid, Spain
An invited lecture on "Introduction to Clinical Proteomics" at Neurobiology Research Centre, National Institute of Mental Health and Neurosciences (NIMHANS), Bangalore on September 12, 2014. Host: Dr. Vani Santosh
Convener for "One Day Awareness Program on Clinical Proteomics" held for clinicians and scientists at Neurobiology Research Centre, National Institute of Mental Health and Neurosciences (NIMHANS), Bangalore on September 12, 2014. Host: Dr. Vani Santosh
Convener for DAY 2: PROTEOMICS (August 7, 2014) in the "Workshop on Bioinformatics and its Application to Neural Disorders" Organized by Dr. B. Padmanabhan, Department of Biophysics, National Institute of Mental Health and Neurosciences (NIMHANS), Bangalore held during August 5-8, 2014
An invited talk on "Advances in High-Resolution Mass Spectrometry and its Utility in Characterizing Disease Biomarkers and Therapeutic Targets" on August 7, 2014, in the "Workshop on Bioinformatics and its Application to Neural Disorders" at the Department of Biostatistics, National Institute of Mental Health and Neurosciences (NIMHANS), Bangalore. Host: Dr. B. Padmanabhan
An invited talk on "Application of High-Resolution Mass Spectrometry in Biomedical Research" on May 8, 2014, during "16th Annual Workshop on Advanced Immunological, Molecular and Animal Cell culture Techniques" held at Central India Institute Of Medical Science, Nagpur. Host: Dr. Rajpal Singh Kashyap
An invited talk on "Curated databases as platform for systems biology" as a part of the "CME on Bioinformatics" held on April 23, 2014 at Postgraduate Institute of Medical Education & Research, Chandigarh. Host: Dr. Arunaloke Chakrabarti
An invited talk on "Proteomics and infectious diseases" as a part of the "CME on Bioinformatics" held on April 23, 2014 at Postgraduate Institute of Medical Education & Research, Chandigarh. Host: Dr. Arunaloke Chakrabarti
An invited talk on "Quantitative Proteomics" at National Dairy Research Institute on April 21, 2014 organized by the Society of Biological Chemists (India), Karnal Chapter, National Dairy Research Institute, Karnal, India. Host: Ashok Kumar Mohanty
An invited lecture on "Genomic and Proteomic approaches to study infectious diseases" on February 20, 2014 at National JALMA Institute for Leprosy & Other Mycobacterial Diseases, Agra. Hosts: Dr. Srikanth Tripathy
Key note lecture on "Vignettes of Integrated OMICS approaches" in a two day workshop on "Next Generation Sequencing Analysis" under TEQIP-II initiative held during February 18-19, 2014 at the Department of Biotechnology, R. V. College of Engineering, Bangalore. Host: Dr. Vidya Niranjan
An invited talk on "Proteomic analysis of Indian Malaria Vector Anopheles stephensi" on November 28, 2013, at 5th Annual Meeting of the Proteomics Society, India - "Developments in Proteomics & Metabolomics in India" held during November 28 to 30, 2013. Host: Dr. Utpal Tatu
An invited talk on "Proteomic analysis of Anopheles stephensi" on September 16, 2013 in the "XII International Conference on Vector and Vector Borne Diseases" held at Udaipur during September 16-18, 2013 organized by National Academy of Vector Biology, India.
An invited talk on "Proteogenomics to Characterize Pathogens, Disease-Vectors and Livestock Animals" on July 26, 2013 at the Southern Campus of National Dairy Research Institute, Bangalore. Host: Dr. K. P. Ramesha
An invited talk on "Proteomic Landscape of Indian Vector of malaria, Anopheles stephensi" on July 17, 2013 at the "EMBO international conference of Molecular and Population Biology of Mosquitoes" held at Kolymbari in Greece during July 15-19, 2013
An invited talk on "Biological Data Resources Developed by Institute of Bioinformatics, Bangalore" at KIIT School of Biotechnology, KIIT University, Bhubaneswar, Odisha on December 7, 2012 at 10:00 AM. Hosts: Dr. P. P. Mathur and Dr. Mrutyunjay Suar
An invited talk on "Advanced Proteomic Technologies to Discover and Validate Biomarkers for Human Diseases" at KIIT School of Biotechnology, KIIT University, Bhubaneswar, Odisha on December 7, 2012 at 12:30 PM. Hosts; Dr. P. P. Mathur and Dr. Mrutyunjay Suar
An invited talk on "An introduction to Proteomics Based Approaches in Biomarker Discovery and Validation" on November 18, 2011 in the "Amrita University- Institute of Bioinformatics workshop" held during November 17-18, 2011 at Amrita School of Biotechnology, Kollam. Host: Dr. Bipin Nair
An invited talk on "Computational Biology at IOB" on November 17, 2011 in the "Amrita University- Institute of Bioinformatics Workshop" held during November 17-18, 2011 at Amrita School of Biotechnology, Kollam. Host: Dr. Bipin Nair
An invited talk on "Proteomic Approaches for Biomarker Discovery" at the Centre of Excellence in Bioinformatics, Pondicherry University on September 23, 2011. Host: Dr. P. P. Mathur
An invited talk on "Bioinformatics for Proteogenomics" on August 11, 2011 organized by the Centre of Excellence in Bioinformatics, Pondicherry University. Host: Dr. P. P. Mathur
An invited talk on "Proteogenomic analysis for Genome Annotation" at "The Indian Proteomics Conference - IPCON2011", held at Jawaharlal Nehru University, New Delhi from April 3-5, 2011. Hosts: Dr. Dipankar Ghosh and Dr. Shantanu Sengupta
Invited lecture on 'Highly curated databases as discovery tools for systems biology' in Center for Information Medicine, Department of Systems Biology, Tokyo Medical and Dental University, Japan on October 13, 2010. Host: Prof. Hiroshi Tanaka
An invited talk on "Biocuration for Databases; An Academic Model" at International Conference of the "Society for Biocuration" held at National Institute of Genetics, Tokyo during October 11-14, 2010. Host: Prof. Takashi Gojobori
An invited talk on "Mass Spectrometry Based Proteomic Approaches for Clinical Research" Fifth Indo-Japan International Symposium on "Innovative Molecular Approaches in Global Health Research" during September 20-22, 2010 at Biyani Girls College, University of Rajasthan, Jaipur, India. Host: Dr. Manish Biyani
An invited talk on "Opportunities for bioinformatics students in Proteogenomics Analysis" on September 17, 2010 in the "National seminar on Computational Biology" between September 15-17, 2010 organized by the Centre of Excellence in Bioinformatics, Pondicherry University. Host: Dr. P. P. Mathur
An invited lecture on 'Proteogenomic analyses of sequenced and unsequenced genomes' in the 'National Conference on Recent Trends in Biotechnology and Industry Academia Interaction' held at Institute of Biotechnology and Bioinformatics in Pune, during March 8-9, 2010. Host: Dr. B.A. Chopade
An invited lecture on "Proteogenomic Analysis of Candida glabrata" at IBAB Bangalore Seminar on Proteomics: Advances, Applications and Challenges - PRAAC 2010 held on February 19-20, 2010. Host: Prof. Yathindra
An invited lecture on 'High Resolution Proteomics and Highly Curated Protein Databases as Discovery Tools in Systems Biology' during the inauguration of 'Society of Biotechnology' at Department of Biotechnology in Mysore University held on November 27, 2009. Host: Prof. H.S. Prakash
An invited lecture on "High Resolution Proteomic platforms for the Discovery Molecular Markers in Cancers" in a CME program for clinicians in Father Mullers Medical College, Mangalore on October 26, 2009. Host: Prof. G. K. Shwetadri
Invited as a Resource Person and delivered a lecture on September 18, 2009 in the National Seminar on "Recent Trends in Structural Bioinformatics & Computational Biology" organized by the Centre of Excellence in Bioinformatics, Pondicherry University. Host: Dr. P. P. Mathur
An invited lecture on 'Genomic and Proteomic Approaches for Cancer Biomarker Discovery' in an orientation program for clinicians in Kidwai Memorial Institute of Oncology in Bangalore on August 25, 2009. Host: Dr. Rekha Vijayakumar
An invited lecture on February 13, 2009 in the workshop "Perspectives and Current trends in Bioinformatics - Bioinformatics Training programme for Senior Scientists and Technologists" held on February 9-15, 2009 at Center for Cellular and Molecular Biology, Hyderabad, India. Host: Dr. Guruprasad
   
New Species of Fungi Discovered
Phalangispora bharathensis T.S.K. Prasad et Bhat, Mycotaxon 83: 405-408, 2002
Speiropsis rogergoosensis T.S.K. Prasad, D’Souza et Bhat, Mycotaxon 82: 127-131, 2002
Stellomyces kendrickii T.S.K. Prasad et Bhat, Mycotaxon 84: 61-63, 2002
Vermiculariopsiella elegans T.S.K. Prasad, D’Souza et Bhat, Frontiers of Fungal Diversity, p. 504, 2003
Vermiculariopsiella parva T. S. K. Prasad, D’Souza et Bhat, Frontiers of Fungal Diversity, p. 506, 2003
Vermiculariopsiella indica T. S. K. Prasad, D’Souza et Bhat, Frontiers of Fungal Diversity, p., 508, 2003
Memnoniella indica T. S. K. Prasad, Asha et Bhat, Mycotaxon 85: 341, 2003