Institute of Bioinformatics






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Ph.DPROGRAMME

IOB has been recognized as Scientific and Industrial Research Organization (SIRO) by Department of Scientific and Industrial Research (DSIR), India. The Faculty at IOB are recognized as Ph.D. guides by Manipal University in Manipal and Kuvempu University in Shimoga. IOB currently has 7 Ph.D. scientists, 11 registered Ph.D. students and 9 students whose Ph.D. registrations underway with Manipal University or Kuvempu University or Amrita Vishwa Vidhyapeetham or Rajiv Gandhi University of Health Sciences or Pondicherry University . Because of a close collaboration of IOB with the Johns Hopkins University, 4 Ph.D. students and a Faculty scientists are carrying out their research work in Dr. Akhilesh Pandey's laboratory at the McKusick-Nathans Institute of Genetic Medicine at Johns Hopkins University.

Current Ph.D. Students

	Students	University	Title
1	Charles Jacob Harrys Kishore	Manipal University	Identification of Protein Tyrosine Phosphatases involved in Epidermal Growth Factor Receptor Signaling
2	Sameer Kumar	Kuvempu University	Tuberculosis meningitis-DNA microarray
3	Deepthi Telikicherla	Kuvempu University	The Breast Cancer Database
4	Abhilash Venugopal	Kuvempu University	Molecular profiling of human temporal lobe epilepsy using microarray technology
5	Nandini A. Sahasrabuddhe	Manipal University	Investigation of role of Dicer using proteomics approach
6	Lakshmi Dhevi Nagarajha Selvan	Amrita Vishwa Vidhyapeetham	Identification of genes involved in non-syndromic X-linked mental retardation
7	Mitali Bhattacharjee	Amrita Vishwa Vidhyapeetham	Differential transcriptomic and proteomic profiling of inflammatory and Infectious arthritis
8	Dhanashree S. Kelkar	Amrita Vishwa Vidhyapeetham	Proteomic analysis and genome annotation of Mycobacterium tuberculosis.
9	Sutopa B. Dwivedi	Amrita Vishwa Vidhyapeetham	Proteomics of mosquito vectors
10	Lavanya Balakrishnan	Kuvempu University	Transcriptomic and proteomic analysis of degenerative and inflammatory arthritis
11	Santosh Renuse	Amrita Vishwa Vidhyapeetham	Proteomics profiling of Pichia pastoris, a widely used yeast for protein expression
12	Yashwanth Subbannayya	Rajiv Gandhi University of Health Sciences	Proteomic analysis of gastric cancer
13	Dr. Renu Goel	Kuvempu University	Mouse Protein Reference Database: A comprehensive repository of Mouse proteins
14	Harsh A. Pawar	Rajiv Gandhi University of Health Sciences	Proteomic analysis of esophageal squamous cell carcinoma-
15	Shyam Mohan Palapetta	Pondicherry University	Bioinformatic and phosphoproteomic analysis of Signal transduction pathways
16	Aneesha Radhakrishnan	Pondicherry University	Phosphoproteomic analysis of Oral cancer
17	Babylakshmi Muthusamy	Pondicherry University	Development of a software suite for the genome annotation of prokaryotes using mass spectrometry derived data.
18	Nirujogi Raja Sekhar	Pondicherry University	Proteogenomic analysis of Neurospora crassa.
19	Sneha M. Pinto	Manipal University	Proteomic analysis of IL-33 receptor mediated signal transduction pathway
20	Jyoti Sharma	Manipal University	in silico analysis of non-synonymous single nucleotide polymorphisms in humans
21	Joji Kurian Thomas	Amrita Vishwa Vidyapeetham	Pancreatic Cancer Database
22	Vishalakshi Nanjappa	Amrita Vishwa Vidyapeetham	Identification of smokeless tobacco induced signaling in oral cancer
23	Srinivas M. Srikanth	Pondicherry University	Analyzing human genomes from Next-Generation Sequencing platforms
24	Tejaswini Subbannayya	Amrita Vishwa Vidyapeetham	Phosphoproteome analysis in gallbladder cancer

Past Ph.D. Students

	Name	Position	Current address
1	Dr. Suresh Mathivanan	Postdoctoral Fellow	Laboratory of Dr. Richard Simpson, Ludwig Institute for Cancer Research, Melbourne, Australia
2	Dr. Shreeharsha Gowda	Wellcome Trust-DBT Early Career Research Fellow	Institute of Bioinformatics, Discoverer Building, 7th Floor, International Tech Park, Whitefield, Bangalore - 560 066 Karnataka, India.
3	Dr. Shivakumar Keerthikumar	Postdoctoral Fellow	Center for Molecular and Biomolecular Informatics, Nijmegen Center for Molecular Life Sciences, Radboud University Nijmegen Medical Centre, Nijmegen, The Netherlands
4	Dr. Kumaran Kandasamy	Postdoctoral Fellow	Laboratory of Prof. Giulio Superti-Furga Research Center for Molecular Medicine of the Austrian Academy of Sciences Vienna, Austria
5	Dr. Manoj Kumar Kashyap
6	Dr. Rajesh Raju	Postdoctoral Fellow	Institute of Bioinformatics, Discoverer Building, 7th Floor, International Tech Park, Whitefield, Bangalore - 560 066 Karnataka, India.
7	Dr. Arivusudar Marimuthu	Postdoctoral Fellow	Institute of Bioinformatics, Discoverer Building, 7th Floor, International Tech Park, Whitefield, Bangalore - 560 066 Karnataka, India.

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