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Institute of Bioinformatics

Following is a partial list of relevant publications by the Founder and Director and/or the staff at the Institute of Bioinformatics from 2002 onward.

 
 

2007 | 2006 | 2005 | 2004 | 2003 | 2002


 
 

2004

Hustinx, S. R., Cao, D., Maitra, A., Sato, N., Martin, S., Sudhir, D., Iacobuzio-Donahue, C., Cameron, J. L., Yeo, C. J., Kern, S. E., Goggins, M., Mollenhauer, J., Pandey, A. and Hruban, R. H. Differentially expressed genes in pancreatic ductal adenocarcinomas identified through serial analysis of gene expression. Cancer Biology and Therapy, 3. 1254-1261. [PubMed]

 
 
Cao, D., Hustinx, S. R., Sui, G., Bala, P., Sato, N., Martin, S., Maitra, A., Murphy, K. M., Cameron, J. L., Yeo, C. J., Kern, S. E., Goggins, M., Pandey, A. and Hruban, R. H. Identification of Novel Highly Expressed Genes in Pancreatic Ductal Adenocarcinomas through a Bioinformatics Analysis of Expressed Sequence Tags. Cancer Biology and Therapy. 3, 1081-1089. [PubMed]

 
 

Rhodes, D. R., Yu, J., Shanker, K., Deshpande, N., Varambally, R, Ghosh, D., Barrette, T., Pandey, A. and Chinnaiyan, A. M. Large-scale meta-analysis of cancer microarray data identifies common transcriptional profiles of neoplastic transformation and progression. Proceedings of the National Academy of Sciences, USA. 101, 9309-9314. [PubMed]

 
 
Navarro, J. D., Talreja, N., Peri, S., Vrushabendra, B. M., Rashmi, B. P., Padma, N., Surendranath, S., Jonnalagadda, C. K., Kousthub, P. S., Deshpande, N., Shanker, K. and Pandey, A. BioBuilder as a database development and functional annotation platform for proteins. BMC Bioinformatics. 5, 43. [PubMed]

 
 
Ibarrola, N., Raghothama, C., and Pandey, A. Proteomic analysis of the adipocyte secretome, in Genomics and Proteomics In Nutrition, Berdanier C.D. and Moustaid-Moussa, N. Eds., Marcel Dekker, Inc. New York. pp 393-411.

 
 

Rhodes, D. R., Yu, J., Shanker, K., Deshpande, N., Varambally, R, Ghosh, D., Barrette, T., Pandey, A. and Chinnaiyan, A. M. Oncomine: A cancer microarray database and integrated data-mining platform. Neoplasia. 6, 1-6. [PubMed]

 
 
Hermjakob, H., Montecchi-Palazzi, L., Bader, G., Wojcik, J., Salwinski, L., Ceol, A., Moore, S., Orchard, S., Sarkans, U., von Mering, C., Roechert, B., Poux, S., Jung, E., Mersch, H., Kersey, P., Lappe, M., Li, Y., Zeng, R., Rana, D., Nikolski, M., Husi, H., Brun, C., Shanker, K., Grant, S. G. N., Sander, C., Bork, P., Zhu, W., Pandey, A., Brazma, A., Jacq, B., Vidal, M., Sherman, D., Legrain, P., Cesareni, G., Xenarios, I., Eisenberg, D., Steipe, B., Hogue, C. and Apweiler, R. The HUPO PSI Molecular Interaction Format - A community standard for the representation of protein interaction data. Nature Biotechnology. 22, 177-183. [PubMed]

 
 

Peri, S., Navarro, J.D., Kristiansen T.Z., Amanchy, R., Surendranath, V., Muthusamy, B., Gandhi, T.K.B., Chandrika, K.N., Deshpande, N., Suresh, S., Rashmi, B.P., Shanker, K., Padma, N., Niranjan, V., Harsha, H.C., Talreja, N., Vrushabendra, B.M., Ramya, M.A., Yatish, A.J. Joy, M., Shivashankar, H.N., Kavitha, M.P., Menezes, M., Choudhury, D.R., Ghosh, N., Saravana, R., Chandran, S., Mohan, S., Jonnalagadda, C.K., Prasad, C.K., Kumar-Sinha, C., Deshpande, K.S. and Pandey, A. Human Protein Reference Database as a Discovery Resource for Proteomics. Nucleic Acids Research. 32, 497-501. [PubMed]

 
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