About Us The Team Research Media Careers Contact
Institute of Bioinformatics

Following is a partial list of relevant publications by the Founder and Director and/or the staff at the Institute of Bioinformatics from 2002 onward.

 
 

2007 | 2006 | 2005 | 2004 | 2003 | 2002


 
 

2002

Pandey, A., Blagoev, B., Kratchmarova, I., Fernandez, M., Nielsen, M., Kristiansen, T., Ohara, O., Podtelejnikov, A., Roche, S., Lodish, H. and Mann, M. Cloning of a novel phosphotyrosine binding domain containing molecule, Odin, involved in signaling by receptor tyrosine kinases. Oncogene. 21, 8029-8036. [PubMed]

 
 

Anand, S.K. and Pandey, A. Screening large proteins for interaction partners. Trends in Biochemical Sciences. 27, 603.

 
 

Muthusamy, B. and Pandey, A. A roadmap of the mouse genome. Trends in Genetics. 18, 553.

 
 

Gandhi, T.K.B. and Pandey, A. Using bioinformatics to identify cis-regulatory sequences. Trends in Biotechnology. 20, 448.

 
 

Blagoev, B., Kratchmarova, I., Nielsen, M. M., Fernandez, M. M., Voldby, J., Andersen, J. S., Kristiansen, K., Pandey, A. and Mann, M. Inhibition of Adipocyte Differentiation by Resistin-like Molecule alpha . Biochemical characterization of its oligomeric nature. Journal of Biological Chemistry. 277, 42011-42016. [PubMed]

 
 

Steen, H., Pandey, A. , Andersen, J. S. and Mann, M. Analysis of tyrosine phosphorylation sites in signaling molecules by a phosphotyrosine-specific immonium ion scanning method. Science STKE 2002(154):PL16. [PubMed]

 
 

Grønborg, M., Kristiansen, T. Z., Stensballe, A., Andersen, J. A., Ohara,O., Mann, M., Jensen, O. N. and Pandey, A. A mass spectrometry-based proteomic approach for identification of serine/threonine-phosphorylated proteins by enrichment with phospho-specific antibodies: Identification of a novel protein, Frigg, as a protein kinase A substrate. Molecular and Cellular Proteomics. 1, 517-527. [PubMed]

 
 

Jebanathirajah, J.A., Peri, S. and Pandey, A. Toll and Interleukin-1 Receptor (TIR) domain-containing proteins in plants: a genomic perspective. Trends in Plant Science. 7, 388-391. [PubMed]

 
 

Steen, H. and Pandey, A. Proteomics goes quantitative: measuring protein abundance. Trends in Biotechnology. 20, 361-364. [PubMed]

 
 

Ong S-E., Blagoev, B., Kratchmarova, I., Kristensen, D. B., Steen, H., Pandey, A. and Mann, M. Stable isotope labeling by amino acids in cell culture, SILAC, as a simple and accurate approach to expression proteomics. Molecular and Cellular Proteomics. 1, 376-386. [PubMed]

 
 

Deshpande, N. and Pandey, A. Mining gene expression data for functional annotation of genomes. Trends in Biotechnology. 20, 282. [PubMed]

 
 

Shankar, S. H. N. and Pandey, A. A novel mode of activating the JAK-STAT signaling pathway. Trends in Biochemical Sciences. 27, 336. [PubMed]

 
 

Kristiansen, T. Z. and Pandey, A. Resources for full-length cDNAs. Trends in Biochemical Sciences. 27, 266-267. [PubMed]

 
 

Schiemann, W. P., Blobe, G. C., Kalume, D. E., Pandey, A. and Lodish, H. F. Context-specific effects of fibulin-5 (DANCE/ EVEC) on cell proliferation, motility, and invasion: Fibulin-5 is induced by TGF-beta and affects protein kinase cascades. Journal of Biological Chemistry. 277, 27367-27377. [PubMed]

 
 

Dan, I., Watanabe, N. M., Kajikawa, E., Ishida, T., Pandey, A. and Kusumi, A. Overlapping of MINK and CHRNE gene loci in the course of mammalian evolution. Nucleic Acids Research. 30, 2906-2910. [PubMed]

 
 

Pandey, A., Dan, I., Kristiansen, T. Z., Watanabe, N. M., Voldby, J., Kajikawa, E., Khosravi-Far, R., Blagoev, B. and Mann, M. Cloning and characterisation of PAK5, a novel member of mammalian p21-activated kinase-II subfamily that is predominantly expressed in brain. Oncogene. 21, 3939-3948. [PubMed]

 
 

Mann, M., Ong, S. E., Grønborg, M., Steen, H., Jensen, O. N. and Pandey, A. Analysis of protein phosphorylation using mass spectrometry: deciphering the phosphoproteome. Trends in Biotechnology. 20, 261-268. [PubMed]

 
 

Kratchmarova, I., Kalume, D. E., Blagoev, B., Scherer, P. E., Podtelejnikov, A. V., Molina, H., Bickel, P. E:, Andersen, J. S., Fernandez, M. M.,Bunkenborg, J.,Roepstorff, P., Kristiansen, K., Lodish, H.F., Mann, M. and Pandey, A. A proteomic approach for identification of secreted proteins during the differentiation of 3T3-L1 preadipocytes to adipocytes. Molecular and Cellular Proteomics. 1, 213-222. [PubMed]

 
 

Pandey, A., Ibarrola, N., Kratchmarova, I., Fernandez, M.M., Constantinescu, S.N, Ohara, O., Sawasdikosol, S., Lodish, H.F. and Mann, M. A novel Src homology 2 domain-containing molecule, Src-like adapter protein-2 (SLAP-2), which negatively regulates T cell receptor signaling. Journal of Biological Chemistry. 277, 19131-19138. [PubMed]

 
 

Dan, I., Ong, S. E., Watanabe, N. M., Blagoev, B., Nielsen, M. M., Kajikawa, E., Kristiansen, T. Z., Mann, M. and Pandey, A. Cloning of MASK, a novel member of the mammalian germinal center kinase-III subfamily, with apoptosis-inducing properties. Journal of Biological Chemistry. 277, 5929-5939. [PubMed]

 
 

Blagoev, B., Nielsen, M.M., Angrist, M., Chakravarti, A. and Pandey, A. Cloning of rat thymic stromal lymphopoietin receptor (TSLPR) and characterization of genomic structure of murine Tslpr gene. Gene. 284, 161-168. [PubMed]

 
  TOP